KEGG   Callorhinchus milii (elephant shark): 103177556
Entry
103177556         CDS       T03088                                 
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk04510  Focal adhesion
cmk04512  ECM-receptor interaction
cmk04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103177556
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103177556
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103177556
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cmk04147]
    103177556
   00536 Glycosaminoglycan binding proteins [BR:cmk00536]
    103177556
Exosome [BR:cmk04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   103177556
Glycosaminoglycan binding proteins [BR:cmk00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103177556
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 103177556
NCBI-ProteinID: XP_007889970
Position
Unknown
AA seq 1673 aa
MLSLKCLWLLAAILLVIQTQSLEAAACHGCKVSSQCDCSGVKGEKGLRGLPGFTGPMGMP
GFPGVEGPPGLVGPKGDFGESGPSGSKGIRGPPGLPGFSGTPGLPGLPGQDGPPGEPGIP
GCNGTKGEIGPIGTSGLTGIQGPPGNPGLQGMKGDPGDSFGDFSGIKGDRGFPGNPGSNG
RPGIPGLQGPVGPPGLSGVPGSPGIPGPPGPKGNMGLQFRGPKGKKGDQGVQGPPGEPGP
GAVSGSPETKVEKGERGQKGETGVPGQRGVPGIHGLPGLAIKGDKGQPGESGKRGKPGKD
GDAGLQGPEGIQGYAGEPGIPGYDGAKGDKGETGIAGPPGLIIDIHGNVLYGVKGDMGLP
GTPGQKGDTGPTGPPGLAGLPGSPGLSLRGEKGLPGFSGEQGQKGEQGIPGLSLSGSPGR
DGSPGPAGRPGPPGLQVLVEDCKDLTGLPGPQGSPGLQGEAGQKGSKGDTCFHCEFALSP
GPAGPQGPPGRSGEDGAPGIKGDYGPPGRPGIEGQPGAQGVPGPLGYPGSKGEPGDFQFS
PGLKGDKGDPGFSGRPGVSGLDGIPGKDGLPGLQGLKGEPATIAFKGDKGFPGIPGLAGL
PGDMGAPGQPGIGEPGLSGEKGERGTSGQPGVPGTPGLKGEPGTTVSKPGLPGPPGIQGF
PGEPGSQGDAGFPGIYGESGAQGHKGDSGPPGIGIQGSTGPKGISGMPGVPGSPGGAGPP
GNDGFPGQQGLKGHKGDPGFGLPGPKGLPGPLGFDGMPGTKGDVGLPGIPGESGQPGLPG
FPGIKGDVGLQGTHGPPGPPGSAGIGVQGPPGKPGPQGAIGPPGFSGQPGEKGDPGFPGL
DIPGPQGEKGSFGIKGNPGPTGFMGQMGPRGRDGLPGYQGSKGEMGVMGTPGSQGFIGPP
GNAGFTGPKGSPGQSGYQGYNGTAGEKGDRGEPGLKGPAGEIDKTLMEQMKGQKGEIGDS
GKPGLQGIKGSGGDPGLPGSPGKDGDPGLPGQQGPAGDPGTPGKPGREGFPGAKGGLGEM
GLPGSSGFPGDPGATGQPGQPGYRGISGEKGTKGETGIPGIGIPGDPGQKGDPGLTGRTG
IPGFKGSPGFPGLPGAIGPVGPKGESGTAGISGGPGFPGEKGQVGVVGEKGLSGIPGEPG
IPGPKGQSGLPGEKGKAGLDGIPGTIGEKGNQGSTGYGIPGRSGQSGVKGLKGDPGLPGY
PGSSGIRGLKGEQGFPGQKGQQGQQGLPGPPNVALEGPKGEQGLQGVPGHPGAPGVQGEV
GTPGFSGNKGIKGDQGLPGLPGFAGPKGQPGIPGPPGNAGLPGAFGLKGDSGHQGVPGFN
GMKGLPGQRGSSGQQGDQGIPGLRGLPGPPGPQGPVQVITGEPGLPGPEGSQGAKGFPGF
QGQKGDKGLMGSEGNPGREGLPGFDGISGQKGELGPSGHPGPRGYPGPTGPLGTPGPRGF
PGPASIAHGFLVTRHSQTTEIPTCPGGTVQIYDGYSLLYVQGNERAHGQDLGSAGSCLQR
FSTMPFLFCNINNVCNFASRNDYSFWLATPEPMPMSMAPITGQSIKPFVSRCSVCEAPAM
VVAIHSQTIQIPACPRGWNSLWIGYSFIMHTSSGAEGSGQALSSPGSCLEEFRSAPFIEC
HGRGTCNYYANSYSFWLATVETSEMFRKPESETLKAGELRTRISRCQVCMKNT
NT seq 5022 nt   +upstreamnt  +downstreamnt
atgcttagtttaaagtgcctgtggctgcttgcagcgattctgctggtgatccagacacag
agcttggaggcagcggcctgccatgggtgtaaagtgagctcacaatgtgactgcagtgga
gtgaaaggagagaagggtttaaggggcttgcctggtttcacaggtcctatgggaatgccg
ggattcccaggagtcgaaggacccccaggtttggtgggacccaagggggattttggtgaa
tcaggaccatcgggatcaaagggaatccgaggccctccagggttgccaggattttcagga
actccaggtctgcctggtttaccaggtcaagatgggccaccaggcgagccaggaatccca
gggtgcaacggtacaaagggtgaaatcggtcccattggtacttcagggttgacaggtatt
caaggccctccgggaaatcctggtttacaaggaatgaagggtgatccaggcgactcattt
ggagacttctcgggaataaaaggggatcgaggttttccaggcaacccgggaagtaatggt
cgaccaggtattcccggtctccagggtcccgtaggtccccccggcctttctggtgttcca
ggttctccaggtatccccgggcctcctggtcccaagggaaacatgggattacagttccgt
ggaccaaagggcaaaaagggggatcaaggagtccaggggcctccgggtgagccaggacct
ggggcagtttcaggctctcctgaaaccaaagtcgagaaaggagaaaggggtcagaaagga
gaaactggagtacctggtcaaagaggagttcctgggattcatggacttcccggtttagca
ataaaaggtgacaaaggccaacctggtgaatctggaaaacgaggcaaacctggtaaagat
ggtgacgcagggcttcaaggtcccgagggtatacaaggttatgcaggtgaaccagggatt
ccaggatacgatggcgctaagggagataagggtgaaacggggattgctggtcctcctggt
cttattattgatatacacggaaatgttctttacggcgtcaaaggtgacatgggtctccca
ggtacacctggacagaaaggtgatacaggacccactggccctccaggacttgcaggtcta
ccaggttctccaggtttatccctgcgaggagaaaaaggtcttcccggattctctggtgaa
caaggtcagaaaggcgagcaaggtattccaggattgtctctgtcaggttccccaggaagg
gatggttcgccaggcccagctggacgtccaggccccccaggattgcaagtgcttgttgag
gactgcaaagatttgactggacttccagggcctcaaggatccccagggctacaaggagaa
gcaggacagaaaggcagcaaaggcgatacgtgtttccactgtgaatttgcattgtcacct
gggccagctggtccacaaggtccaccaggacgatcgggtgaggatggggctccaggtatc
aagggtgactatggtccaccaggaagacctggtattgaaggccagcctggagctcaaggg
gtaccaggtcctttgggttatcctggatcaaagggtgaaccaggtgatttccagttttcc
cctggactaaaaggagataaaggagacccaggtttttcaggcagaccaggtgtttctggg
ctggatggaatacccggaaaggatgggttgccaggtcttcaagggttgaaaggtgaacca
gccactattgctttcaaaggggataagggtttcccaggaattccaggcttagctgggctg
ccaggagacatgggtgctccagggcagccaggaattggtgaaccagggctttcaggtgaa
aagggcgaaaggggaacttcaggtcaaccgggtgtccctggaacaccaggtcttaaaggt
gaaccaggcacaactgtaagtaaaccaggcttgccaggcccacctggaatacagggattt
ccaggtgaaccaggtagtcaaggtgatgcaggttttccaggtatatatggtgaatcaggt
gctcaaggacacaaaggtgactcgggcccaccaggaataggaattcaaggctcaactggt
cccaaaggtataagtggaatgcccggagttccaggttcacctggaggggcaggacctccg
ggaaatgatggtttcccaggtcaacagggtctaaaagggcataagggagatccaggattt
ggtcttccaggcccgaaaggactaccagggccacttggctttgatggaatgccaggaacg
aaaggagatgtgggactccctgggattcctggagagtcaggtcaaccaggcttgcctggt
tttccaggcattaaaggtgatgttggtctccagggcacacatgggcctccaggtcctcct
ggctctgcaggaattggtgtccaaggaccacctggaaagccaggcccccaaggtgccata
ggccctccaggattttcaggccaaccaggagagaaaggtgaccctggcttcccaggtcta
gatataccaggacctcagggagagaagggcagctttggaatcaaaggtaaccctggtccc
acaggctttatgggtcaaatgggtccacgtggaagagatggacttccaggttatcagggt
tctaaaggagaaatgggagtaatgggcactccaggcagccaaggtttcattggtcctcca
ggaaatgctgggttcacaggtccaaaaggcagccctggccaatctggttaccaaggatat
aatggaactgcaggtgagaaaggtgaccgaggtgagcctggacttaagggaccagcagga
gaaattgacaaaactttaatggagcaaatgaaaggccagaaaggtgaaatcggagattca
ggaaagcccgggttacaaggaataaaggggagtggaggagaccccggcttgccgggatca
ccaggaaaagatggtgatcctggattaccaggacaacaggggccagcaggtgatccaggt
actccaggaaaaccaggccgtgaaggttttccaggagcgaaaggaggtttaggagaaatg
gggcttccaggttcttcgggatttcctggtgatccaggagctacaggacagccagggcag
ccagggtatcgtggtatcagtggtgaaaaaggtacaaaaggtgaaactggcataccaggc
attggaattccgggtgatcctggtcaaaagggagatccaggattaactggccggacaggt
attcctgggttcaagggctcaccaggtttcccagggttgccaggtgctattggtccagta
ggacccaaaggagaatctggaacagcagggatttcaggtggtccagggtttccgggagaa
aaaggtcaagtcggtgttgttggggaaaaagggttatcaggaattcctggcgagccaggt
attcctggtcctaaaggtcaatcaggcctccctggagagaaaggtaaagcaggactcgat
ggaatcccaggaacaattggtgaaaagggtaatcaaggttctacaggatacggtattcca
gggcgttctggacaaagtggtgtaaaagggttgaaaggagatcctggtttaccgggttac
ccaggctcgtctggcattcgtggcctcaaaggagaacaagggtttcctggtcaaaaaggc
cagcaaggtcaacaaggccttccaggtccaccaaatgttgctttggagggtccaaagggt
gagcaaggactgcagggggtcccaggacatccaggtgcccctggtgtgcaaggagaggtt
ggaactccagggtttagtggaaacaaaggaatcaaaggagatcaaggtttaccaggatta
ccaggttttgcaggacctaaaggacagccagggatcccaggtcctcctggtaacgcaggc
ctgcctggtgcttttggattgaagggcgattcaggacatcaaggagttccagggttcaat
ggaatgaaaggattgccgggccaaagaggctcttcaggtcaacagggtgatcaaggtatc
cctggtctgaggggtctgccagggccacctggtccacaaggtcctgtgcaggtaataaca
ggtgaacctggtttacctggaccagaagggtcacaaggtgctaaaggctttccaggattt
caaggtcaaaaaggtgacaaaggtctaatgggctcagaaggtaaccctggccgagaaggg
cttcctggatttgatgggatatctggccagaaaggagaacttggtccatctggtcatcca
ggtccaagaggatatcctggtccaacagggcccctgggcacgcctgggcctcgtgggttt
ccaggtcccgcatcaatagctcatggctttcttgttaccagacatagccaaacaactgag
atccctacttgtcctgggggcacagtccaaatctatgatgggtactctctgctttatgta
caaggcaatgaaagagctcatgggcaggacttgggttcggcgggaagctgcctgcagaga
ttcagcaccatgccattcttattttgcaatatcaataatgtctgcaactttgcatctcga
aatgactactccttttggctggcaactccagagccaatgccaatgagcatggctccgatt
accgggcaaagtatcaaaccctttgtcagcaggtgctctgtttgtgaagctccagcaatg
gtggttgctatccacagtcaaacaatccaaatcccggcttgccccaggggttggaattct
ctttggattggctattctttcataatgcacacaagttctggtgctgagggctcaggacag
gccctgtcctcgccaggctcatgcctagaagaatttcgctctgcccccttcatcgaatgc
catggacgtgggacttgtaactactacgctaactcatatagcttctggctagcaactgtt
gagacttcagagatgttcaggaaaccagaatctgagacccttaaagcaggagaactgcga
acacgcatcagccgttgccaagtctgcatgaagaacacgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (71)   
   KEGG ORTHOLOGY (1)   
   RefGene (67)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (84)   

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