KEGG   Callorhinchus milii (elephant shark): 103178396
Entry
103178396         CDS       T03088                                 
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cmk  Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmk03021]
    103178396 (chd1)
   03036 Chromosome and associated proteins [BR:cmk03036]
    103178396 (chd1)
Transcription machinery [BR:cmk03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     103178396 (chd1)
Chromosome and associated proteins [BR:cmk03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     103178396 (chd1)
    SLIK complex
     103178396 (chd1)
SSDB
Motif
Pfam: SNF2-rel_dom CDH1_2_SANT_HL1 CHD1-like_C Helicase_C Chromo CHDCT2
Other DBs
NCBI-GeneID: 103178396
NCBI-ProteinID: XP_007891302
Position
Unknown
AA seq 1826 aa
MEGHNDEESVSNSSGDSSQSDKESGSSSGSSSDGSSSRSDSNDSSDSDSGSDSGSQSDSD
TSGSRSNASSSRGKRPAESKVPKTDGAEFWKSHPSILAVQRSAMIRKQQQQLQQQQLSSN
NGSEESSSSEGSDDESSSESTTKHKKHRDEDWQMSGTGSEEEEEEEEGQHKSTSGDSESD
YQPTNKVKSRKPQNRAKTKSVKKGKVLKKQTESSDDDDGPDDKRASRRQATVNVSYKEDE
DAKTDSDDLVEMCGEDVPPPLEEEEEFETLERLMDSRKGKKGATGAATTVYAVEAEGNPN
FGFDPLKEVGECQYLIKWKGWSHLHNTWESEETLLQQNTKGMKKLENYKKKEEDKKRWLK
AASPEDIEYFNCQQELVDDLHSQYQFVERIIAHSNQKGVSGFPDYLCKWQGLSYSECSWE
DGGLISRKFKSYIDAYMNRNQSKTIPFKECKVLKQRPRFVALKKQPSYIGSSDVLELRDY
QLSGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHEHQLYGPFLLVVPLSTLTS
WQREIELWSPEMNVVVYLGDISSRNVIRTYEWMHPQNKRLKFNILLTTYEILLKDKSFLG
GVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSSHRLLITGTPLQNSLKELWSLLRFIMPEK
FASWEIFEEEHGKGREVGYTSLHRELEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQ
YYKWILTRNYKALSKGCKGSTSGFLNIMMELKKCCNHCYLIKLPEANDFYNRHEALQHLI
RSSGKLILLDKLLCRLKERGHRVLIFSQMVRMLDILAEYLKCRQFCFQRLDGSIKGELRK
QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK
KQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGSNPPNSTPFNKEE
LASILKFGAEELFKEPEGEEQEPQEMDIDEILRRAETRENEAGPTTVGEELLSQFKVANF
TTMDDDLEPQRNIKEWDDIIPEVQRRRMEEEARQKELEEIYLLPRMRNCAKQISFNGNDG
RRRRRRSSESDSDSVSEGKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERL
EAIARDAELVDKSEVDLRRLGEMVHNGCIKALRESTAQEKTAARRGKVKGPTFRISGVQV
NAKLVIAHEEELAPLHKSISPDPEDRKKYTIPSHTKAAHFDVDWNKEDDSNLLIGIYEYG
YGSWEMIKMDPDLNLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLAEAN
SKKRKPRNKRSKAVKVVKVEEIKSDSSPPPPSVKSSDEEGEIKDDVPGTKPSKRKSKMEK
ENEERVDHEVAVKKEMEEKEIKKEAKEKEGRKDKKEKEEKKDAKEKDIKKDIKDKKEMKE
KESVHREKEVKEEKATEVKMEMKEKSKKPLLADVPVHITASSEPIPIAEEAEELDQNTFS
ICKERMRPVKAALKQLDRPEKGLSEKEQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWR
KNLWIFVSKFTEFDARKLHKLYKHAIKKRLENSRHNDQHSSTLNIHNAKHSEPEKPRENS
HNDDSSRESHSSDRHHSSHYHDHHRDQHHSDSSRKRPYSSFSNGKDHRDRDHYRSDSRYY
SENKHRKLDEHRSRGHRSEASSKESRSHSDHRSHSDHRSSSDYRSHLDHRSSSDHRSHLD
HRSSSDYRSHSDHRSSSEYSGQKSSRDYRYHSDWPVDHRPSSSGPRSPLDQRSPYDSRSP
LEHRSPLDYSSDHKSTPEHTWNSRKT
NT seq 5481 nt   +upstreamnt  +downstreamnt
atggagggtcacaatgacgaggaaagcgtcagcaacagcagtggagactcaagtcaatca
gacaaggaatctggttcgagttcagggagcagcagtgatggcagcagcagccgttccgat
agcaatgactccagtgactctgacagtggctcagactcaggcagccaatccgattctgat
acatcaggttcaagaagtaatgcatcatcatccagagggaagagaccagctgagagcaaa
gtccccaaaaccgatggagcagagttttggaaatctcatccaagtattttagctgttcag
agatctgccatgatcaggaaacagcagcaacagctacagcagcagcaattgtcatcaaac
aatggctcagaggagtcttctagtagtgaagggtctgatgatgaatcttccagtgaaagc
actactaaacacaagaaacacagagatgaagactggcaaatgtctggtactgggtctgaa
gaggaggaagaggaggaggaaggtcaacataagagtacctcaggagacagtgaatctgac
tatcagcccaccaacaaagtcaaaagcaggaaaccccagaacagggctaaaacaaaaagt
gtgaagaagggtaaggtattgaagaaacagactgaatcatcagatgatgacgatggacct
gatgataaaagggcttctcgtcgccaggcaacggtaaacgtcagctacaaggaagatgaa
gatgccaaaactgattctgatgacttggttgaaatgtgtggggaagatgttcctcctccc
ctggaggaagaggaagaatttgagacactagaaagattgatggattctcgaaaagggaag
aaaggagcaactggtgctgccaccactgtctatgcggtagaggctgagggtaatcccaat
ttcgggtttgatcccttgaaggaggtaggcgaatgtcagtacttgatcaaatggaaggga
tggtctcacctccacaacacctgggagagcgaagaaacacttttgcaacaaaacacaaaa
ggaatgaaaaaactggagaactacaagaaaaaggaggaagacaagaaacgatggctgaaa
gcagcatctcctgaagacatagaatacttcaactgtcagcaggagctggtagatgacttg
cacagtcagtatcaatttgtggagcgaataattgcccactccaaccagaaaggtgtatca
ggttttccagactacttatgcaaatggcaaggcctttcatactctgaatgcagctgggaa
gatggaggtcttattagcagaaagtttaaatcgtacattgacgcatatatgaaccggaac
caatcgaaaaccatcccttttaaggaatgcaaggtcttaaagcaaagacccagatttgtt
gcactgaagaaacagccatcatatattggaagttctgatgtattggagctccgggactat
cagctatcagggttaaattggttggcacactcttggtgcaagaacaatagtgttatcctc
gctgatgaaatgggtcttgggaaaacaatacaaaccatctccttcctcagctatctgttc
catgagcaccagctgtatggacctttccttttagtagttcctctctcaacgctaacttcc
tggcagcgagaaattgaactgtggtcacccgaaatgaacgttgttgtttacttgggtgat
atcagcagcaggaatgtgataagaacatacgaatggatgcatcctcagaataaaaggttg
aaattcaatatcttactgacaacatatgagattttgctaaaagataagtcattccttgga
ggtgtaaattgggctttcattggtgtggacgaagctcatcgcttgaagaatgacgattct
cttctttataaaaccatgatggattttaaatccagtcaccggctgcttatcactggtacc
ccactgcaaaactccctcaaagaactctggtccctccttcgtttcatcatgccagaaaaa
tttgcttcttgggaaatatttgaagaggaacatggtaaaggaagagaagtcggatacaca
agccttcacagggagcttgagccattcttactgcggagagtgaaaaaggatgttgagaaa
tccctacctgccaaggttgaacagatcctgcgagtggagatgagtgcacttcagaaacaa
tattacaagtggattttgaccaggaattacaaagccttaagtaaaggctgtaaaggcagc
acatctggttttctcaatataatgatggaacttaaaaagtgttgcaaccattgctacctc
attaaattgcctgaagcaaatgatttctacaacagacacgaggccttacagcatctgatc
cgcagcagtgggaagctgatcttgttggacaagctgctgtgtcgactaaaagaacgagga
catagagtgcttattttctctcagatggttcggatgctggatattctagcagagtatttg
aaatgcagacagttttgtttccagagacttgatggatctattaagggggaactaaggaaa
caagcacttgaccatttcaatgcagaaggatctgaagacttctgcttcttgctgtcaacc
agagcaggagggctgggtataaacttagcatctgcagacacagtggttatttttgattca
gactggaatccacaaaacgatttgcaggctcaagccagagctcacaggattggtcagaaa
aaacaggtgaatatataccggctagttacaaagggaacagtagaagaagagatcattgaa
agagcaaagaagaaaatggtgttggatcatcttgtcatacaacgaatggatacaacaggg
aaaacagtgctgcacactggttccaatcccccaaattctactccatttaataaagaagag
ctggcatctatcctgaagtttggagctgaggaacttttcaaggagccagaaggagaggag
caagaaccacaggaaatggatattgatgaaattcttcgtcgtgctgaaacacgggagaat
gaagctggtcccactacagtgggtgaggagctgctctcacagttcaaggtggcgaatttt
accacaatggacgatgatcttgaacctcaacgaaacattaaggaatgggatgacattatt
ccagaggtacagagaagaaggatggaagaagaagcccgacagaaggagcttgaagagatc
tatttgcttcctcgaatgcgcaactgtgccaaacagatcagttttaatggaaatgacgga
agacgcagaaggaggagatcttcagagtcagacagcgactcagtatctgaagggaaacgc
cccaaaaaacgtggtcggccgcgaacaattccacgagaaaacattaaaggcttcagtgat
gctgaaattagaaggtttatcaagagttacaagaagtttggtggaccccttgagaggcta
gaagcaattgcacgagatgctgaactggtggataaatctgaggtggacctcaggaggttg
ggagagatggtgcacaatggatgtattaaagcacttcgagaatccacagcccaagagaag
actgctgcccgtcgtggtaaagtgaaaggacctacatttcgcatctcaggcgtgcaggtc
aatgctaaacttgtgattgcccatgaagaggaactggcacctttgcacaaatccatttca
ccagacccagaggatagaaagaagtacacaatcccaagtcacactaaagcagctcatttt
gacgtggactggaacaaggaggatgactctaaccttttaataggcatctatgagtatggc
tatggcagctgggaaatgataaagatggatccagatctgaatttaacgcacaagattctg
cctgatgatccagataagaagccgcaggccaagcagttgcagaccagagctgactacctc
atcaaactgctcagtaaagacctggccaggaaggaggcacagaggctggctgaggctaat
tcaaaaaaaaggaagccgaggaataaaagaagtaaggctgtaaaagttgtgaaggtggaa
gaaattaaaagtgattcatctccaccacctccctcagtcaaaagctcagatgaagaagga
gaaatcaaggatgacgtccctggaacaaaaccctcaaaaaggaaatcgaaaatggaaaaa
gaaaatgaggaaagagtggatcatgaagtggcagtcaagaaagagatggaagaaaaggaa
atcaaaaaagaggctaaagaaaaagaaggtagaaaggacaaaaaggaaaaggaggaaaag
aaagatgcaaaagaaaaagatatcaagaaggatatcaaagacaagaaagaaatgaaagaa
aaagaatctgtacatagagaaaaagaagtgaaagaagaaaaggcaactgaagttaaaatg
gagatgaaggagaagtctaagaagccattgcttgctgacgtcccagttcatatcactgca
agcagtgagcccattcccattgccgaggaagcggaagagcttgatcaaaatacatttagt
atttgtaaagaaaggatgaggcctgtgaaggcagcactgaaacagctggacaggcctgag
aagggtctttcagaaaaggagcagctggagcacaccaggcagtgcttgatcaaaataggt
gaccacattaccgagtgtctgaaggagtactcaaaccctgaacaaatcaaacagtggaga
aagaatctatggatttttgtttcaaagttcactgaatttgacgcaagaaaactgcacaaa
ttgtacaagcatgcgatcaagaagagactggagaactctcggcataatgaccagcacagc
agtactctcaacattcacaatgccaaacactcagaacctgaaaagccgagggagaattct
cacaacgacgacagcagtagggaaagccattcatctgaccgacaccactcatcacattat
catgaccaccatagagatcagcatcacagtgattcatcaagaaagagaccgtattcctcg
tttagcaatggcaaagaccaccgagaccgggatcattaccgatcagatagcaggtactac
agtgaaaataagcacaggaagcttgatgaacacaggagtcggggtcaccggtcagaggcc
agttcgaaggagagtagatcccattcagaccaccggtcccactcagatcatcgatccagc
tcagactacagatcccatttggatcatcgatccagctcagaccacagatcccatttggat
catcgatccagttcagactacagatcccattcagatcatcgatccagctcagaatactca
ggccagaaatcctccagggattacaggtaccactcagactggccagtggaccataggcca
tcaagtagtggcccaaggtcccccctggatcagaggtccccttatgactccagatcacca
ttggaacacagatccccccttgattactcttccgatcacaaaagcaccccagagcacacc
tggaacagccgtaaaacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (122)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (140)   

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