KEGG   Callorhinchus milii (elephant shark): 103180532
Entry
103180532         CDS       T03088                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X3
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    103180532
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cmk03000]
    103180532
   04121 Ubiquitin system [BR:cmk04121]
    103180532
   03036 Chromosome and associated proteins [BR:cmk03036]
    103180532
Enzymes [BR:cmk01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     103180532
Transcription factors [BR:cmk03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    103180532
Ubiquitin system [BR:cmk04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     103180532
Chromosome and associated proteins [BR:cmk03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    103180532
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     103180532
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box LRR_4 PHD
Other DBs
NCBI-GeneID: 103180532
NCBI-ProteinID: XP_007894650
UniProt: A0A4W3IR50
Position
Unknown
AA seq 724 aa
MALSPDDEDYDTSQPRAPARLKPRPAPSSGPKLLVHKSTSGARRRRTRCRKCEACLRTEC
GECHFCKDMKKFGGPGRMKQSCIKRQCIAPVLPHTAVCKICGEAGKEDSVVDEAEKFNAS
LMECSICNEIIHPGCLKVEDSEGHINDELPNCWECPKCNQEGKTGKEFKEGEDGGRRKSE
DLGRPKSEDYHSNRRKSDDGLGLKRRKDKDVPADLGPRKKLRGGKDDKLQKRKKRKPAPD
SDESSKTNHLERSEHAQRIERIRQMMKRVNRNEASSSSSSSDSDSDSSSASEASLQRSAG
SSGGSSPRSIEKGDNQRSKLRRLSNDIFSEEDDEEEEDEEEENSRNSKTNSLSLASSIRE
NNYHSLKGENIQRNSIRTMGIPFKKKNGPSSHFCQKVLGSLPRPQIVSKLSVQSPPKPFQ
MERHVVRPPPDSPEPDSLPLAGGSEHVMQREVWLAIFSYLSHRDLCICMRVCKTWNKWCC
DKRLWTTISLSRCKSITPTMLSGIIRRQPITLDLSWTNISKKQLSWLINKLQNLKILALA
GCVWSAISALCTPNCPLLRMLDLRWVEDLKDSQMRELLSPPTDCRIGQNDHQSRLWNLTE
VRLAGLDLTDSSLALITRHMPVLNKLDLSQCSHVTDQSIALLTTAGSSTRETLTEISLAG
CHRITDQCLLLLKHCPNLVRIDLRNCRLIAPKACQQFVDGMAATVPFELPEDKLLTRSRL
RPTK
NT seq 2175 nt   +upstreamnt  +downstreamnt
atggcactgagtcccgatgatgaagactatgacacctctcagcccagggccccagcaaga
ctaaagcctcggccagccccttcgtcaggacccaaactccttgtccataaatcgacgagt
ggtgcccgcagacgcaggacacgatgtcgcaaatgcgaagcttgcttgcgaaccgagtgt
ggcgaatgccacttctgcaaagacatgaagaaatttggcggccctggcagaatgaagcag
tcctgcatcaagaggcaatgtattgctcctgtgctaccacacactgcagtctgcaagatc
tgcggtgaggcagggaaagaagacagtgtggtggatgaagcggagaaatttaatgctagc
ttaatggaatgctccatctgcaatgaaattatacacccaggatgtctaaaggtggaagat
tctgaaggacatatcaatgatgagttgccaaattgctgggaatgtccaaaatgcaaccag
gagggtaaaacaggcaaagagttcaaagaaggtgaagatggagggcgacggaagtcagaa
gatctcggacgtccgaaatctgaggactatcattcaaaccggcggaaatccgatgatggt
ttggggctaaaacgaagaaaggacaaggatgttccggcagatttaggcccaagaaaaaag
ctaagaggaggaaaggatgataaacttcaaaaaaggaagaaacggaaaccagcaccagat
tctgatgaatccagtaaaacgaatcacctagaaagatctgaacatgcacaaaggatagaa
cggatccgacagatgatgaagcgtgtaaaccgaaatgaggcctccagttccagctccagt
tccgattctgattcggattccagttctgcttcagaagctagtctccagcggtcagcagga
agcagtggaggctctagtccaagatccattgaaaagggagataaccagaggtcaaagctc
agaaggctatcgaatgatattttcagcgaggaggatgatgaggaagaggaagacgaggag
gaagagaacagcaggaactccaaaaccaattccctttctctggcttcgagtatccgagaa
aataattaccattccttaaaaggggagaacattcagagaaactccattaggacaatgggg
attccgttcaagaaaaaaaatggaccgtccagtcacttctgtcagaaggttctcggaagt
ctgcctcgtcctcagatagtaagcaaactctctgtccaatcacctcccaaaccatttcaa
atggaacgccatgtggtgcgacctccgccagacagcccagaacccgattccctaccactt
gctggtggctcagaacatgtgatgcagcgggaggtatggctggcgatattcagttacctc
agtcatagggacctatgcatctgtatgagggtctgcaagacctggaataaatggtgttgt
gacaagcgcctgtggaccaccatcagcctgagccgctgtaagtccatcactcccaccatg
ctgagcggcatcattcggagacagccaatcacactggaccttagctggaccaacatctct
aagaaacagctcagttggctcataaacaagttgcaaaatttgaaaatcctggcacttgcg
ggttgcgtgtggagcgcaatctctgcactttgtacaccaaattgcccgctcctccgcatg
ctggatctccgctgggtggaagatcttaaggactcacagatgagggaactgctttcaccg
cctacagattgcagaataggtcagaatgatcaccagagcagattgtggaatctcacggag
gtgcgcttggctggcctcgatctcactgactcgtctctggcgctgatcacccgccacatg
cctgtgctgaacaagctggacctcagccagtgcagccacgtgacagaccagtccatcgcc
ctcctcaccactgccggatcttccacccgggaaacgctgacagagatcagcctggcaggt
tgtcatcgaatcacagatcagtgcttgctgctacttaaacactgcccaaacctcgtccga
atcgacctgcggaattgcagactgattgcccccaaggcctgccagcagtttgtggacggg
atggcggccactgttccctttgaacttcccgaggacaaacttttaacacgaagccgttta
cgacctacgaagtag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (87)   

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