KEGG   Callorhinchus milii (elephant shark): 103184384
Entry
103184384         CDS       T03088                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03030  DNA replication
cmk03410  Base excision repair
cmk03420  Nucleotide excision repair
cmk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103184384 (rfc5)
   03410 Base excision repair
    103184384 (rfc5)
   03420 Nucleotide excision repair
    103184384 (rfc5)
   03430 Mismatch repair
    103184384 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmk03032]
    103184384 (rfc5)
   03036 Chromosome and associated proteins [BR:cmk03036]
    103184384 (rfc5)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103184384 (rfc5)
DNA replication proteins [BR:cmk03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103184384 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    103184384 (rfc5)
Chromosome and associated proteins [BR:cmk03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103184384 (rfc5)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103184384 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    103184384 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_22 AAA_assoc_2 AAA_24 AAA_11 AAA_14 DNA_pol3_delta AAA_16 RuvB_N DEAD DUF815 AAA_19 ResIII PhoH AAA_5 AAA_7 AAA_30 ATPase_2 TIP49 TniB T2SSE Thioredoxin_6 Mg_chelatase AAA_2 bpMoxR Viral_helicase1 RNA_helicase
Other DBs
NCBI-GeneID: 103184384
NCBI-ProteinID: XP_042193399
Position
Unknown
AA seq 333 aa
MATGREVRSRNLPWVEKYRPETLNDLISHQDILSTIQRFISEDRLPHLLFYGPPGTGKTS
TILACAKQLYKDKEFNSMVLELNASDDRGINTVRGPVLSFASTRTIFKKGCKLVILDEAD
AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLAPEQMIPRLEY
VIQQENVDITPDGLKAIVTLSNGDMRRSLNILQSTNMAYDRVTEDTVYRCTGHPLKSDIA
NILDWMLNKDFTTAYKNIMELKTLKGLALHDILTEIHTFVHRVDFPPTVRIHLLIKMADI
EYRLAAGTSEKIQLGSLIAAFQVARDMVVAEVE
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcgaccgggagggaagtgaggagcaggaacctgccctgggtggaaaagtaccggcct
gaaaccctgaatgatctgatttcccatcaagacattcttagcacaattcagcggtttatc
agtgaagaccggctccctcatctgctgttctatggacccccagggactggcaagacatct
actatattggcttgtgccaaacaactgtataaggacaaagagttcaactccatggttctc
gagctgaatgcatctgatgaccgaggcattaacacagtgcgtggaccggttctgagtttt
gcaagcacaagaacaattttcaagaaaggttgtaagcttgttatcctggatgaggcagac
gcaatgactcaagatgctcagaatgccctcagacgggttattgagaaatttacagaaaac
accaggttttgcctgatttgcaactacctgtcaaagatcatcccggctctgcaatctcga
tgcaccaggttccgattcggaccactggctcccgaacagatgattccgaggctggagtat
gtcatccaacaggaaaatgtggacatcactccggatggactgaaagcgattgtgaccctt
tccaacggggacatgcgtcgatctttgaacattttgcagagcacaaacatggcgtacgac
agagtgacggaggatacagtgtacaggtgtactgggcacccactgaaatcagacatcgcg
aatatccttgactggatgctaaacaaggatttcaccaccgcgtacaagaatatcatggag
ttaaagacattaaagggattagcactgcacgacattctgactgagattcacacttttgta
cacagagttgatttcccgcctacagttcgcatccatttattgatcaagatggcagatatc
gagtacaggctggctgctggcacgagtgagaaaatccagctcggctcactgatcgccgca
tttcaagtcgcccgtgacatggttgtcgctgaagtcgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (30)   
   Pfam (30)   
All databases (90)   

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