KEGG   Callorhinchus milii (elephant shark): 103186928
Entry
103186928         CDS       T03088                                 
Symbol
dhx40
Name
(RefSeq) probable ATP-dependent RNA helicase DHX40
  KO
K18711  ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
Organism
cmk  Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmk03019]
    103186928 (dhx40)
Enzymes [BR:cmk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103186928 (dhx40)
Messenger RNA biogenesis [BR:cmk03019]
 Eukaryotic type
  mRNA processing factors
   Other processing factors
    103186928 (dhx40)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C DEAD AAA_22 HA2_N HA2_C AAA_16 T2SSE nSTAND3 AAA_19 AAA_30 Ligase_CoA_2 Flavi_DEAD
Other DBs
NCBI-GeneID: 103186928
NCBI-ProteinID: XP_042194487
Position
Unknown
AA seq 748 aa
MWKNEANERGTEGRERGTEGRAGATDSLPIRKHREQLVEAVKRNPFLIVTGETGSGKTTQ
LPQYLRRAGFAQDGLIGVTQPRRVAAMSVALRVAEEMCCPLGADVGYQVRFDDCTSEATA
IKYMTDGCLLREILKDPGLSRYSIIILDEAHERSLSTDILFGLLKNLMAQTGSCDRRSPL
KVVVMSATLETEKLVKFLDDCPVYHVSGRTFPVKQTFCNLIGPRDKESTAFVKEVVDITL
EIHMNELEGDILVFLTGQSEIERACDILYQKAESIDYQYSVRDRCVEGLLILPLYGSLPT
DQQKKIFLPAPTHIRKCVVATNIAATSLTIDGIRYVVDSGFVKQLNHNPRVGLDILEVVP
ISKSEAVQRAGRAGRTSAGKCFRIYSKEFWEKCMPDHMVPEIQRTSLTSVILTLKCLGVN
NVIGFPYLDSPEERHILEALKQLYQCDAIDRLGCVTKLGRLMVEFPLPPALTGAVLKAGA
LGLEDLLLPVAAMLSVENVFIRPGNSEKQKEADLRHREMALEAGGTNDFATLLNVFEKCR
ANASPATWCREHWIHWRAMKTAFSVEKQLREILCRVKQMKDFPIETFDGSSSELLRRCLC
AGYFSNVIRKSVGRTFYTMDGHGSVVHIHPSSILFDQESQLDWVIFHDVLVTSKVYVRNL
CPVRYEWVKDLLPKLHEIDVYQLSSVARDQVTEEMVTRGAKQDSKQKSEQEVEEALKKLE
KRNDDQSISDARARYLQRKLEKSHSNAR
NT seq 2247 nt   +upstreamnt  +downstreamnt
atgtggaagaacgaggctaatgagaggggtacggagggcagggagaggggtacggagggc
agagctggggccacggactcgctgcccatccgcaagcacagagagcagttggtggaggca
gtgaaacgcaatcccttcctcatcgtgaccggagagacggggagtggcaaaaccacacag
ttaccgcagtatctgcgccgggcaggctttgcgcaggacggtctgatcggggtgacgcag
cccaggagggtggctgccatgtcggtggccctgcgggtagcggaggagatgtgctgtccc
ctgggggctgacgtggggtatcaggtccgcttcgatgactgcacgtccgaggcgactgcc
ataaagtacatgacggatggctgtttgcttcgggagatcctgaaggacccgggtctcagt
cgttacagcatcatcatcctggacgaggcccacgagaggagcctcagcacagatattctc
tttggtttgctgaagaacctgatggcacagacgggctcctgtgatcgtcgatctcccctg
aaggtggtggtgatgtcggccacgctggagacggagaaactcgtgaaattcctggatgac
tgccccgtctatcatgtctctggacgcaccttccccgtcaagcaaaccttctgcaatctg
atcggcccgagggacaaggagagcactgcctttgttaaagaggttgtggacattactctg
gagatccacatgaacgaattggaaggagacatcttagtttttttaacgggtcagtctgag
atcgagcgagcttgtgatatactttaccagaaggcggaatcaatagattaccaatacagc
gtgagagatcgatgtgtggaagggctgctgatcctgcccctttatgggtcactgccaacg
gatcagcagaaaaagatctttcttcctgctccgactcacatcagaaagtgcgtcgttgct
actaacattgctgccacctctttgacaattgatggaataaggtacgtggtggacagcggc
ttcgtgaagcagttaaaccacaatcctcgagtcggcctggacatcctggaggtggtccca
atctccaagagtgaggccgtgcagcgggcaggaagagctggaagaacatccgctgggaaa
tgcttccggatctacagcaaagaattttgggagaagtgtatgcctgatcacatggtcccc
gagatccagagaacaagtttaacgtctgtgatcctgactctcaaatgtctgggagtcaac
aatgttattgggttcccatacctcgacagtcctgaggaacgacacattttggaggctctg
aagcagctgtaccagtgcgacgctattgacaggttgggatgtgtaaccaaactgggccgt
ctgatggtggagtttcctctccccccggctctgaccggcgcagtgctgaaggcgggagcg
ctgggcctcgaggaccttttactgcctgtggctgcgatgctttcggtggaaaacgttttc
attcgaccaggaaactcggagaaacagaaagaagctgatctgaggcaccgggagatggca
ctggaggctggcggcaccaacgactttgcgacgctgctcaacgtgtttgaaaagtgtaga
gcaaatgcctccccagccacctggtgccgtgaacactggatccactggcgggcgatgaag
acggcgttcagtgtggagaaacagctccgagaaatactctgtagagtgaaacagatgaag
gacttccccatcgagacctttgatggctccagcagtgagctgctgagaaggtgtctgtgt
gccgggtatttcagcaatgtcatcagaaagtcggtgggaagaaccttctacacaatggac
ggacacggatcagttgttcacattcatccttcctccatcctgtttgatcaggaaagccaa
ctggactgggttatatttcacgatgtcctggttacgtctaaagtctacgtgcggaacctg
tgcccggtgcgttacgagtgggtgaaggacctgctgcccaaactgcacgaaatcgacgtg
taccagctgagcagtgtggcgagggatcaggtgaccgaggagatggtgacaaggggagca
aagcaggattctaaacaaaaatctgaacaagaggtggaggaagcgctgaagaaactggag
aagaggaatgatgaccagtccatatcggacgctcgagcccggtaccttcagcgaaagctc
gagaagtctcacagcaacgctcgctga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (45)   

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