KEGG   Chlamydia muridarum Nigg3 clone G0.1.1: NC80_02960
Entry
NC80_02960        CDS       T03404                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cmm  Chlamydia muridarum Nigg3 clone G0.1.1
Pathway
cmm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cmm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NC80_02960 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmm03021]
    NC80_02960 (rpoB)
   03400 DNA repair and recombination proteins [BR:cmm03400]
    NC80_02960 (rpoB)
Enzymes [BR:cmm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NC80_02960 (rpoB)
Transcription machinery [BR:cmm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NC80_02960 (rpoB)
DNA repair and recombination proteins [BR:cmm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NC80_02960 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AIT90766
UniProt: A0A070A5S6
Position
complement(705078..708836)
AA seq 1252 aa
MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKS
YNEATILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPIM
TDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNVLFSFRIIPYRGSWLEASFDINDL
IYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFAVEEHSLRSEKDFVALVGKVLADN
VVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAVGADENHPIIKMLAKDPTDSYEAA
LKDFYRRLRPGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNKKLGFPLDDETLSQVT
LRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARMEKIVRE
RMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLSALGP
GGLNRERAGFEVRDVHSSHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRVVR
DGIVTDEIEYMTADVEEDCVIAQASAELDEYNMFKDSVCWARYKGEAFEADTSTVTHMDV
SPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKDSGAI
VVAQEDGVVEYVDSYEIVVAKKNNPTLKDTYPLKKFLRSNSGTCINQTPLCSVGDVVTHG
DVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISEKLIKQDAYTSIYIEEFELTA
RDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPKSETELAPEER
LLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKE
YKSQLAQLKMEHREKLGALLLNEKAPAAIIHRRSADILVQEGAVFDQETIELLERESLVD
LLMAPCDMYDVLKDILSNYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQVKVYVASKR
KLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLG
YAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYM
LKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT
VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA
NT seq 3759 nt   +upstreamnt  +downstreamnt
atgttcaagtgcccggagcgggtcagcatcaaaaagaaagaagatattttagatcttcct
aatcttgtcgaagttcaaatcaagtcgtataagcagtttcttcaaattgggaagctagct
gaagagcgagaaaacattggtttagaagaagtcttcagagaaattttccctatcaaatca
tacaatgaagctacgattttagagtacctctcttataacttaggagtgcccaaatactcc
ccagaagagtgtattcgtcggggaattacttatagcgttaccttaaaggttcgtttccgt
ttgactgatgaaacgggaattaaggaagaagaagtctatatgggaactattcctattatg
actgacaagggaacctttattatcaatggagcagaaagggtcgttgtttctcaagttcac
cgttctccagggattaactttgagcaggagaaacattctaaagggaatgttttgttctct
tttagaattattccttatcgaggaagttggttagaggcttcttttgatattaatgacctc
atctatattcacattgataggaaaaaacgtcgtagaaagattttagctatgacgtttatt
cgagcattggggtattcgacagatgctgatattatcgaagaatttttcgctgtagaagag
cactctctgcgttcagaaaaagattttgttgctttagttggtaaagttttagcagacaat
gtagtagatgcggattcttcgttagtttacgggaaggctggagagaaactcagtactgct
atgctgaagcgcattttggatgctggggtacaatctttaaaaattgccgttggagctgat
gaaaatcatccaattatcaagatgttggcaaaagatcctacagattcttacgaagctgct
cttaaagatttttaccgcagattgcgtccaggtgagccagcaactttagctaatgctcgt
tctacgattatgcgtctatttttcgattctaaacgttataatttaggtcgtgttggacgt
tataaattaaataaaaaattagggttccctctagatgacgaaacactgtctcaagtgact
ttgagaaaagaagatgttattggagctctaaagtatctaattcgtttgcgaatgggtgat
gagaagacgtctatcgatgatatcgaccatttggcaaaccgacgtgtccgttctgttgga
gaattaattcagaatcattgccgatcaggattggctagaatggaaaaaatcgttcgagaa
agaatgaatctcttcgatttttcttccgatacgttaactcctggaaaaattatttctgcc
aaagggctagttagtgtcttgaaagatttctttagccgttcccagttgtcccaatttatg
gatcaaacgaatcctgttgcggaattgacacataagcgtcgattatctgcattaggacct
ggaggattgaatagggaaagagccggttttgaagttcgagacgttcattccagccactat
ggtagaatttgtccaattgaaactccagaaggaccaaacattggattgatcacttccttg
tcctcttttgctaagatcaatgaatttggctttattgagactccttatcgcgttgtgcgt
gatggcatcgtaacagatgaaattgagtacatgactgctgatgttgaagaggattgtgtc
atcgctcaggcatctgcggagcttgatgaatataacatgtttaaggattctgtatgttgg
gctcggtataaaggagaagcttttgaagcggatacgagtacggtcacacatatggacgtc
tctcctaaacaattggtgtctgtagttaccgggcttattcctttcttagagcatgacgat
gctaaccgagctcttatgggatcgaacatgcaacggcaggctgtgcctttattgaaaacg
gaggctgctattgtcggaactggattagaaggacgtgcagctaaggattctggagctatt
gttgttgctcaagaagatggggttgttgaatatgtcgacagttacgagattgttgtagcg
aagaaaaataacccaacgctgaaagatacatatccacttaaaaagttcttaagatctaac
tctggaacatgcatcaaccagactccgttatgttctgtcggagatgtagtgacacatggg
gatgttttggctgatggacctgcaacggataaaggagaacttgcacttggtaaaaacgtg
ctagtagcctttatgccttggtatgggtacaacttcgaagatgcgattatcatctctgaa
aaattaatcaaacaggatgcctatacttctatctacatagaagagtttgaactgacagcc
cgagatactaaacttggtaaagaagaaatcacaagagacattccgaatgtttctgaggaa
gttttagcaaatttaggagaagacggaattgtccgtattggtgctgaagttaagcctggg
gatattcttgttggtaaaatcactccaaaatctgaaactgagttagctcctgaagaacgc
ttattgcgagctatttttggtgaaaaagctgctgatgttaaagatgcttctttaacggtt
cctcctggtacagaaggggtcgtgatggatgttaaagtcttcagtagaaaagatcgcttg
tctaagagtgatgatgaactggttgaagaggctgtgcatcttaaagacttgcaaaaagag
tataagagccagcttgctcagttgaagatggaacatagagagaagttgggagctttattg
cttaatgagaaagctcctgcggcaatcattcatcgacgctctgcagatattttagtgcag
gaaggggctgtttttgatcaagaaactatagagcttttagaaagagagtctttagttgat
ctcctaatggctccttgtgatatgtacgatgttttgaaagacattctttctaactatgaa
acagctgttcagcgtttggaagtaaattacaagacagaggctgaacacataaaagagggt
gatgccgatttagaccacggggtaatccgacaagttaaggtctatgtagcctccaaacga
aaattacaagttggggataaaatggctggacgtcacggaaacaaaggggttgtttccaag
attgttcctgaagcggatatgcccttcttggcgaatggagagacggtacagatgatcttg
aacccattaggggtgccttctcgaatgaaccttggacaggttttggaaacgcatctggga
tatgctgcaaaaacagcaggtatctatgttaagactcctgtctttgaagggttccctgaa
tcgcgtatttgggacatgatgatcgagcaaggcttacctgaagatggtaaatcctactta
ttcgatggtaagactggagagcgtttcgacagtaaagtggttgttggatacatctatatg
ttgaaattgagccacctgattgcagataagatccatgctcgttcgataggaccttactct
ctcgttacccaacagcctctcggaggaaaagctcagatgggaggacaaagattcggggag
atggaagtttgggccttggaggcatatggagtagctcatatgttacaagagatcctaacc
gtgaaatctgacgatgtttcgggaagaactcgtatctatgagtcaatcgttaaaggagaa
aacttacttcgttctggaacgcctgagtcgttcaatgttttgattaaagaaatgcaaggt
ctagggctcgatgttcgccctatggtagtagatgcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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