KEGG   Cucumis melo (muskmelon): 103490568
Entry
103490568         CDS       T03195                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103490568
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmo03019]
    103490568
Messenger RNA biogenesis [BR:cmo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103490568
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103490568
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 103490568
NCBI-ProteinID: XP_008448344
UniProt: A0A1S3BJG5
Position
11:19865773..19871983
AA seq 715 aa
MAEELPDHQTNIPLTNECKTKLLKEVIPHKSCKLTLLGQVIKVFHSPFDKGCNTNKISCS
LQSSLNGSTSNLPDGTGRSFATSFSGQSGAASPVFHHSGGGLHNIHGSFNIQNMSGALTS
RNSTINNVPSGGVQQPTGTLSSGRFASNNLPVALSQLSHGSSHGHSGVTSRGGINVVGNP
GFSSSTNAVGGSIPGILSTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVSGGNIGR
SVTAGGGLSLPGLASRLNLNSNSGSGSLTVQGQNRLISGVLPQGSQQVLSMLGNSYPSAG
GPLSQNHMQSVNSLNSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQLSSLRKQG
LSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDIHQKDQHENSVPMMQSQQFSIGRSAG
FNLGGTFSHRPQQQQQHSSAVSNSTVSFPPANNQDLLHLHGSDIFPSSHAASYHQQSSGP
PGIGLRPLSSPNSASGMGYDQLQQYQQHHGQSQFRLQHMSGVSQSFRDQGIKSMQAAQSS
PDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSPWSDEPAKGDPD
FNVPQCYLIKPPASLHQGYFPKFSLETLFYIFFSMPKDEAQLYAANELYNRGWFYHKEHR
FWFIRVSNMEPLVKTSTYERGSYLCFDPHTFETVRKDNFVLHYEMVEKRPVLSQH
NT seq 2148 nt   +upstreamnt  +downstreamnt
atggcagaggaactccctgatcatcaaacaaacatccctttgacgaatgaatgcaaaacc
aaactcctgaaagaagtcattccacataaatcttgcaaactgacactcctagggcaggtg
ataaaggttttccattcacctttcgacaaaggatgcaacaccaacaaaatctcttgttct
ttgcagtcatctcttaatggatcaacttcaaatcttccagatggtactgggcgatctttt
gctacctcattttctggtcagtctggtgcagcctcccctgtctttcatcactccggagga
gggttgcataacattcatggaagcttcaatattcagaacatgtcaggtgcactaacttca
agaaattcaacgataaataatgttccatcaggtggggtgcaacaacctacaggaacactt
tccagtggacgttttgcatcgaacaaccttcctgttgctctttcccagttgtctcatggc
agctcccatgggcattcaggagtcacaagtagaggaggtataaatgttgttgggaaccct
ggatttagtagtagcacaaatgcagttggcgggtctattccggggattctgtctacttct
gctgctattggtaatcgaaatgctgttccaggattgggtgtatccccaattttgggaaat
gcaggtcctcggatcacaagttcaatgggcaatatggtcagtggaggcaacatcggaagg
agtgtaacagcaggtggaggattgtcactacctggtcttgcttctcgtctaaatcttaat
tcaaatagtggatccggaagcttaactgtccaaggacaaaaccgtctaataagtggtgtg
ctaccacaaggatctcaacaggtcctttctatgttgggtaattcttatcccagtgctgga
ggtcccctttcccaaaaccacatgcagagtgtgaatagtttgaattctttggggatgttg
aatgatgtgaacgccaatgacaactctccttttgacattaatgattttccacagttaaca
agtcgtccaagttctgcaggagggcctcagggacaattaagttcgctgaggaagcagggt
cttagtcctattgttcaacaaaaccaagagttcagtattcagaatgaggactttccagca
ttaccgagatttaaaggtggcaatgctgattatggtatggacattcatcagaaagatcaa
catgaaaattctgtgcctatgatgcagtctcagcaattctctattggaaggtctgctgga
tttaaccttgggggcaccttttcgcatcgaccccagcagcagcaacagcattcttctgcc
gtcagtaacagcacggtctcctttccacctgcaaataatcaggatctcctccatttacac
ggatcagatatatttccatcttcacatgctgcttcttatcaccagcagtctagtgggcct
cctggtattggtctaagacctctaagttctcctaattcagcttctggaatgggttacgat
caacttcagcagtatcagcagcatcacggtcaatctcaatttcgtttgcaacacatgtcc
ggtgttagtcagtcatttagagatcagggcatcaaatctatgcaggcagctcaatcgtct
cccgatccgtttggtttacttggtttgttaagtgtgataagattgagtgatcctgatctt
gcatcccttgcactcggaattgatttgaccacgttaggattaaatttgaattcagcagat
aaccttcacaagacttttggctccccatggtctgatgagcctgccaagggtgatccagat
ttcaatgtaccgcaatgctatcttattaaacccccagcttcactacaccaagggtatttc
ccaaaattttctctggagacgctgttttatatatttttcagcatgccaaaagatgaagct
cagttgtatgctgcgaatgaactttataatagaggctggttttatcacaaagaacatcga
ttttggttcattcgagtttcaaacatggaaccacttgtgaagactagcacgtacgaaaga
ggatcgtatctctgtttcgaccctcacacatttgaaactgtccgcaaggataatttcgtt
ctccactacgagatggtagaaaagagaccagttctatcgcaacattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (1)   
   RefSeq(pep) (12)   
DNA sequence (12)   
   RefSeq(nuc) (12)   
Protein domain (1)   
   Pfam (1)   
All databases (34)   

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