KEGG   Cucurbita moschata (crookneck pumpkin): 111450710
Entry
111450710         CDS       T05248                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
  KO
K07466  replication factor A1
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03030  DNA replication
cmos03420  Nucleotide excision repair
cmos03430  Mismatch repair
cmos03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111450710
   03420 Nucleotide excision repair
    111450710
   03430 Mismatch repair
    111450710
   03440 Homologous recombination
    111450710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cmos03000]
    111450710
   03032 DNA replication proteins [BR:cmos03032]
    111450710
   03400 DNA repair and recombination proteins [BR:cmos03400]
    111450710
Transcription factors [BR:cmos03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    111450710
DNA replication proteins [BR:cmos03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    111450710
DNA repair and recombination proteins [BR:cmos03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     111450710
   MMR (mismatch excision repair)
     111450710
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     111450710
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon CDC24_OB3
Other DBs
NCBI-GeneID: 111450710
NCBI-ProteinID: XP_022946724
UniProt: A0A6J1G4P2
Position
Unknown
AA seq 621 aa
MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLND
IIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENFAQKA
MPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIP
IAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF
YEVIEVGKVYLISKGSLKPARKDFNHLNNEWEVFLEASSTVEHCPDEDDTIPRQQFSFRP
ISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFC
NKEGQNLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDG
GGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCY
TACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQE
TGEEILGVSAKELYILKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVV
KADRVNYSSESKYMLDLLSKR
NT seq 1866 nt   +upstreamnt  +downstreamnt
atgccggtgcatctcacgccgaatgcaatctctgcaattgtcgctggtgacgttaattcc
aagcccctagtgcaggtcctagatatcaagctgatcggtaatacgcaggagaggtacagc
ctcttgatctccgatgctgtttctaccgagcaggctatgctcgcaactcagctcaatgat
attattaagactggacgagtcaagaaaggatcagttatccagttgatcgattatgtttgc
agtcccattaagagccgcaaggttattgttgtgctcagcctggaaactattatattggac
agtgagataattgggaatccaaaatcatctgctcaatcagagaattttgcacaaaaggca
atgccatctggaaatttagagcaacctgccaaggttggtaatcgtcttgtgagtgccaga
aatccagttaataatgtgcagagcttccaagctacagttcaacctccgtatcagccacct
ccaaattataaaaatcatggtgcaatcattaagaatgaggcaccagcccgtgtaattccc
atagctgcgttgaatccttatcagggacgatgggctataaaggcaagagttactgcaaag
ggtgatctccgtcgctataataatgccaaaggtgatggaaaagttttctcttttgacctc
cttgattctgatggaggagagatacgtgtgacctgcttcaatgctgttgttgatcgtttc
tacgaggtcatagaagttggtaaagtttacttgatttctaaaggtagcctaaaacctgcg
cggaaggatttcaatcacctaaacaatgaatgggaggttttcttggaggcatcttccact
gtggaacattgtccagatgaagatgataccataccaagacagcagttttcttttagacct
atcagtgaaattgaaaatgctgaaaccaactctattctggatgttattggtattgtaaca
tccatcaatccatcaattcctgttttgaggaaaaatggtatggaaactcaaagaagagtt
ctgaatttgaaggatgcgtctggcaggagtgtcgagctgacactgtggggagatttttgc
aacaaagaaggtcaaaatctgcaagaaataattaactcaggcctctcgccagttttggct
gtgaagtctgggaaagtaagtgatttcactgggaaatccattgggacaatttcttctaca
cagcttttcgtaaatccagatctttctgaggctctcatcttgagagactggtacgatggt
ggggggaagaatactacttctctgtctatttctaaagaaattatgtcaggatctgccaag
aatgagattcgaaagtctgtatctcagataaaagatgaaggacttggcagatctgataag
ccagattggataaccgtgaaagcaacaatatcgtttattaaaacagattccttctgctac
acagcatgtccattaatgattggagatcggcaatgcaacaagaaggtgactagatcagga
aactcgaagtggctgtgtgaccggtgcaatcaagaatttgaggattgcgattacaggtat
cttctccaagcccaaatccaagaccatactggattgacatgggtgaccgccttccaggaa
actggtgaagagattctgggtgtctcagccaaggagttgtacattttgaagtatgaacag
caggatgatgtcaagtttggtgaaataatcagaagtaaaattttcgatcaatttctgttt
agactcaaaatcaaggaggagatgtacggggatgaacagagagtgaaaaatactgtagtt
aaggcagatagggtaaactattcttcagaaagcaaatatatgttggatttgctttcaaag
aggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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