KEGG   Cucurbita moschata (crookneck pumpkin): 111451626
Entry
111451626         CDS       T05248                                 
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111451626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111451626
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111451626
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111451626
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 111451626
NCBI-ProteinID: XP_022947868
UniProt: A0A6J1G7T4
Position
Unknown
AA seq 349 aa
MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDE
ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
DFGKLKKDGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF
KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV
ESCNEYELSKKLKEFEVLKSHFKFVEHEYETAQFCYYKACNIMYQGFHL
NT seq 1050 nt   +upstreamnt  +downstreamnt
atggatagaattgttcgaggcccgagaggagataaccctttgattagagaggtatgggct
tacaatcttgatcatgaaatcattcggctcgaccgttgtttgctatcgtactcaattatg
tcgatcgatactgaatttcctgggtgcattaagagaactccttggggcacgtttgatgaa
gaactctacgcagattttcgattcaatgtcaaccaaaccaaagtgattcaactaggtgtg
acagtttctgatgaatcagggaacatcggcggtacatgggagtttaatttctctgacttc
gatcctgaaatcgacgctcataaccctgcgtcgatttgttttctgaaacagaacggcttg
gattttggaaaactgaaaaaagatggaattaaggttagaaaattcgcaataagattctta
tatacgttgggaaagcatgcgatataccggtgggttacatttcacggattatacgatatt
ggatatctgatgttggcgatgggtgtggttaaaagcttgccggaaacattgggcgaattc
aaatggatcgtggcgaggagagtgggaaccgtgagggatttaaagcatatggcgcgattc
tgcgaagggcttgaaggggggaatttaggactcgagaaattagggcaattgctagaccaa
aaacgctttggattgaagcatcacgcaggttctgatagtttaatgactgcactgcttcat
gagaagatgttgcaacggtatgatttccatgcggaaatttgcgatgggtttttgtatggg
ctgtcgaagaaattcgaggagctcgtgggcttgcaaacacatcgcatatatgttcaaatt
cagtgtgcgagagtgaaagctatggtgattcataagaagatgttacaactgtttgaggtg
gaaagttgcaatgaatatgagctgtcgaagaaattaaaggagttcgaggtcttgaaatca
cacttcaaatttgttgaacacgagtatgagacggcgcaattttgttattacaaggcttgc
aacattatgtaccaaggatttcatctttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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