KEGG   Cucurbita moschata (crookneck pumpkin): 111456065
Entry
111456065         CDS       T05248                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:3.6.4.13]
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111456065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmos03041]
    111456065
Enzymes [BR:cmos01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     111456065
Spliceosome [BR:cmos03041]
 Complex C
  Other components
   Step II factors
    111456065
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N AAA_22 SLFN-g3_helicase AAA_19 Flavi_DEAD AAA_24 AAA_30 nSTAND3 T2SSE ATPase ResIII ABC_tran AAA_16
Other DBs
NCBI-GeneID: 111456065
NCBI-ProteinID: XP_022953559
UniProt: A0A6J1GNB0
Position
Unknown
AA seq 1286 aa
MKTQGGDGGVIDIEKTTLLLEPENNSEGGLSVPGKDRPVFRPPERRSHLGLDVLANAKRG
GSNDNGFKIPKQSIASFVSSMEEEETLELSGVIDSGKESISHNHSVKNRNYREIVSNDSY
EGTPSVQEEIAGDSFKHHNSSETSDSSVITMSSKSAHMSRYRSPRQDYDNHDRERKDFDN
DGRSNNRRARHGHNYDGDEPYYGRSRYQKDYGREHERKRSRYESSRRTPGRSDWDDGRWE
WEETPRRDGRSSSSRHHQPSRSPMYVGASPDARLVSPWLGGNTPNSTGSSASPWDHISPS
PVPVRASGSSIKSSSSSYHSKSHNLTFSSRSSPSSEDYQTDKSEINGTKYEISENMRQEM
EYNSDRAWYDRDEGNTMFDADSSSFYFGDDAAFQKKEAELAKRLVRRDGTKMTLSQSKKL
SQLTADNAQWEDRQLLRSGAVRGTEVQTDFDDEEEKKVILLVHDTKPPFLDGRVVFTKQA
EPIMPIKDATSDMAIISRKGSALVREIHEKQNMNKSRQRFWELAGSKLGDILGVEKTAEQ
IDADTAAVGDEGEVNFKEDAKFAQHMKKGEAVSDFAKSNTLAQQRQYLPIYSVRDDLLQV
IRENQVIVVVGETGSGKTTQLTQYLFEDGYTTNGIIGCTQPRRVAAMSVAKRVSEEMECE
LGDKVGYAIRFEDVTGPTTIIKYMTDGVLLRETLKDSDLEKYRVIVMDEAHERSLSTDVL
FGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYV
EAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALAERIEQLISTTKKGVPKLLILPIY
SQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDA
LQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLK
SLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKML
LMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRVEESDAARERFFIPESDHLTLYNVYQQWK
QHQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDLVRKAICSAYFH
NAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDHVVYHELILTTKEYMQCATAVEPQ
WLAELGPMFFSVKESDTSLLEHKKRQKESKTAMEEEMESLRKIQVESERENKEKEREKRR
QQQQQVSMPGLRQGSGTYLRPKKLGL
NT seq 3861 nt   +upstreamnt  +downstreamnt
atgaagacgcaaggaggagatggtggagttattgacatagagaaaacaacactattgctg
gaaccagagaataattctgaagggggattgtcagttcctggaaaggacagaccggtgttt
agacctcctgagagaagatctcatctaggcctcgatgtacttgcaaatgcaaaacgggga
ggatctaatgataatggattcaaaatccccaagcaaagtattgcttcttttgtttcgtca
atggaggaagaggagacacttgaattatctggtgtcattgattcgggaaaagaatctatt
tcacataatcattctgttaaaaatcggaattatcgggaaatagtttccaatgattcatat
gaaggtactccttcagttcaagaagaaatagctggagattcatttaagcatcataactct
agtgaaacttcagattctagtgttataactatgtcatccaaaagcgctcatatgagcagg
tataggagccctagacaagactatgataatcatgatagagagagaaaagattttgacaat
gatggtagaagcaataacaggcgggcaagacatgggcacaattatgatggtgatgagcct
tattatgggagatcccggtaccaaaaggactacggcagggaacatgaaagaaaaagaagt
agatatgaaagttcacgaagaactccaggtagatctgattgggatgatggtagatgggaa
tgggaagaaacaccacgtagggatggccgctccagctctagtaggcaccatcaaccttca
cgatccccaatgtatgttggtgcctcaccagatgctcggttagtttctccatggttgggt
gggaacactcctaactctactggttcttctgcttcaccttgggatcatatctctccttct
ccagttccagtacgtgcctctggatcgtcaataaaatcatccagttcaagttatcattct
aaatctcataatcttacattttcatcgcgaagttcaccttcctctgaggattatcagaca
gacaagtctgagataaatggaacaaagtatgagatcagtgagaacatgcgccaggagatg
gagtacaactctgatcgggcttggtatgatagagatgaaggtaatacaatgttcgatgct
gatagctcatcattttactttggagatgatgctgccttccagaagaaagaagctgagctg
gccaaaagattggtccgtcgagatggaaccaagatgaccctttctcagagcaaaaagctg
tctcagctcactgcagataatgcacaatgggaagaccgacaacttttgagatctggagct
gttaggggtactgaggtgcagactgactttgatgatgaggaagagaaaaaagtcattctt
cttgtccacgatacaaagcctcctttccttgatggaagagttgtttttactaaacaagcc
gaaccaataatgccaataaaagatgctacatcagatatggctataatatcgcgcaaagga
tctgcgttggtcagggaaattcatgagaaacaaaacatgaacaagtcacgacaacgcttt
tgggagcttgcaggctccaaacttggtgatatccttggtgttgaaaaaacagcagagcag
atagatgcagatactgcagcagtaggtgatgaaggtgaggtcaatttcaaggaagatgcg
aagtttgcgcagcacatgaagaagggggaagcagtgagtgactttgctaagtcaaatacc
ttagcacaacaaagacagtatcttcctatatattcagtcagagatgatctgctgcaggtt
atccgtgaaaatcaggtgattgtggtggttggagaaactggttcaggaaagaccacacaa
ttgactcagtatctatttgaggatggttatactacaaatggtatcattggttgcacccaa
ccaaggcgtgtggcagctatgagtgtagccaaaagagtcagcgaagagatggagtgcgag
ttgggtgataaagtaggttatgccattcgattcgaggatgtaactggaccgacaactatt
attaagtatatgactgatggagttcttctgcgtgaaactctcaaagattctgatctcgaa
aagtaccgtgtaattgtaatggatgaagcacatgagaggtcacttagcactgacgtcctc
ttcgggatcttgaaaaaggtggttgcccaacgtcgtgatttcaagcttatcgtgacatct
gcaactcttaatgctcaaaagttttcgaacttttttggaagtgtccccatttttcacatc
cctgggagaacatttcctgtgaatactttgtacagcaaaactccatgtgaagattacgtc
gaagcagccgtaaagcaggctatgaccatccatatcacaagccctcctggtgacattctt
atcttcatgactggccaagacgagattgaggcagcctgttttgcccttgcagagcgtatc
gaacagctcatttcaaccacaaaaaagggggtgcccaaacttttgatacttcccatctat
tcgcagctgccagccgacttgcaagctaagatattccagaaagccgaagatggcgctcgt
aaatgcattgttgccaccaatattgccgagacttccttgactgttgatggaatattttac
gttattgacactggttatggtaaaatgaaagtgtataaccctagaatgggtatggatgca
ctacaggtatttccagtaagtcgtgctgctgctgatcagcgtgctggacgtgccggtaga
actggacctggtacttgctaccgtttgtacacagaaagtgcgtacttaaacgaaatgttg
ccaagtcctgtgccagaaatccaaagaaccaacctggggaatgttgttttgctgcttaaa
tctcttaaagttgagaacttgctggattttgacttcatggatccaccaccacaagataac
attcttaactctatgtaccagttgtgggtattgggggctcttaacaatgtaggaggtttg
actgaacttgggtggaagatggttgagttccccctagatcccccactggccaaaatgctt
ttgatgggcgaacagcttgggtgtctcgatgaggtactgacgattgtttcgatgctttca
gtaccatcagtatttttccgacccaaagatcgagtcgaggagagtgatgctgcaagggaa
agatttttcataccagaatccgaccatttaacgctgtataatgtttatcaacaatggaaa
caacaccagtacaggggggattggtgcaatgaccatttcttgcacgtcaaagggctacga
aaggctcgagaggtgcggtcgcagttgttagacattttgaagactctgaaaatacctctg
acatcctgttggcccgatacggatctcgtgagaaaagctatctgctctgcttattttcac
aatgcagctagactgaagggtgtgggagaatatgtgaattgcaggaatgggatgccatgc
catcttcatccaagcagtgctctgtatggcatgggatgtactcccgaccacgtcgtgtat
cacgaactgattttgacgacaaaggagtatatgcagtgtgcaactgcagtcgagcctcaa
tggttggctgaacttggaccgatgttcttctccgtcaaggagtcagatacatcactcttg
gagcataagaaaaggcaaaaagaatcgaaaacagccatggaagaggaaatggagtcgtta
agaaagattcaagtcgagtccgagagagaaaacaaggagaaggaaagggagaagaggaga
cagcagcagcaacaagtttctatgcctggtttacgtcaaggttctggaacttatctaaga
ccaaagaagctaggtttgtga

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