KEGG   Cyclobacterium marinum: Cycma_2561
Entry
Cycma_2561        CDS       T01592                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
cmr  Cyclobacterium marinum
Pathway
cmr03420  Nucleotide excision repair
cmr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Cycma_2561
   03430 Mismatch repair
    Cycma_2561
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cmr03400]
    Cycma_2561
Enzymes [BR:cmr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Cycma_2561
DNA repair and recombination proteins [BR:cmr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cycma_2561
   MMR (mismatch excision repair)
    Other MMR factors
     Cycma_2561
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_30 Viral_helicase1 DEAD AAA_11 ResIII CarD_TRCF_RID CowN Terminase_6N
Other DBs
NCBI-ProteinID: AEL26300
UniProt: G0IW80
Position
complement(2993397..2995643)
AA seq 748 aa
MEYLATLNPPQLEAVKKTEGPVMIIAGAGSGKTRVLTYRIAHLIHEKKVDAFQILSLTFT
NKAASEMKQRIEKLIGLEARNTWMGTFHSVFAKILRVEAQKLGYPSNFTIYDSDDSKSLI
RSIVKEMKLDDKVYKANTVLSRISGAKNRLIGWQAYLNDPYITADDEAAMKPKMGEIYKA
YQSRLFRSSAMDFDDLLFNTNILFRDHPDVLNKYQQRFRYVMVDEFQDTNLSQYLITKKL
AAVHQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLLVVKLEQNYRSTKNIVETANSI
IAKNKSQLKKNVWTQNDSGDLIELMKASSDNEEGRMVAATIFEEKNNKQLSNSDFAILYR
TNSQSRSMEEALRKSGIAYRIIGGLSFYQRKEIKDLMGYFRFVVNHEDEEAFKRIINYPK
RGIGNTSVEKLMVGAYEHDISLWKVLNNSQSFISGRGANAVTDFCTMINSFKMEVERKDA
FEAATFIAKQSGLLRDLYEDKTIEGLNRYENVQELLNAIKEYVDNPENEDKSLGAFLQEI
ALLTDEDQNKNNQDTVTMMTIHSSKGLEFKYVFVVGMEEDLFPSQMMMQSREDLEEERRL
FYVATTRAMEKLYFSYALTRYRYGRLLNCEPSRFLEEIDPTFIKVNKKLSSKLSSSFRES
EGKQGFVGLKKKPAIRNTTTKLHDPGPNFKPSNTNNLKEGMKVEHPKFGFGKVHGIETEG
TNRKAHIHFDHFGDKTLLLSFAKLRIVE
NT seq 2247 nt   +upstreamnt  +downstreamnt
atggaatatttagccacccttaatcctcctcaacttgaagctgttaaaaaaacagagggt
ccggtaatgattattgcaggggcaggttcaggaaaaaccagagtgcttacttataggatt
gcccatttaattcacgaaaaaaaggtagatgcttttcaaatcctttcactaacctttacc
aataaggccgctagtgaaatgaaacagcgcatagaaaaattaattggtttagaagcaagg
aatacttggatgggtacttttcactctgtttttgctaaaatcctgcgagtagaggcacag
aaattaggttacccaagcaatttcacgatctatgacagtgatgatagcaaatcgcttatc
aggtccatcgtaaaagagatgaaattggatgataaagtttataaggccaatacagtactt
tctagaatttccggagctaaaaacaggctaatcggctggcaagcttaccttaatgatccc
tatattactgcagatgatgaggctgccatgaagcctaagatgggagaaatctataaagct
tatcaaagcagactatttaggtcttctgccatggattttgatgacttgcttttcaatacc
aatattctgtttcgggaccatcccgatgtgcttaacaagtaccagcaaaggtttagatat
gtgatggtggatgagtttcaagacaccaatctttcccaatacctgattactaaaaagctt
gcagctgttcaccaaaatatatgtgtagtgggggatgacgcgcaaagtatttatgctttt
aggggtgcagatatccaaaacattctgaattttgaaaaagattatcctgatctattggtt
gttaagctggaacaaaactacagatctaccaagaatattgtagaaaccgccaattctatc
atcgccaaaaacaaatcacagctcaaaaaaaatgtatggactcaaaatgattccggagat
ttaattgaattgatgaaagcctcatctgacaatgaagaaggcagaatggtagcagcgact
atatttgaagagaaaaacaacaagcagctaagcaatagtgatttcgccattttgtaccgg
acaaactctcagtccagatcaatggaggaggccttaaggaaatcaggaatcgcttacagg
attatcggaggcctctcgttttatcaaagaaaagaaatcaaagacctgatggggtacttt
aggtttgtagttaatcatgaagatgaggaagcttttaaaagaattataaattacccaaag
aggggtataggaaataccagtgtggaaaaactcatggtaggagcctatgagcatgatatt
tcattgtggaaagtgctcaacaatagccagagttttatatccggaagaggggcaaatgca
gtaacggatttttgcaccatgatcaatagcttcaagatggaggtggaaagaaaagacgct
tttgaagcagccacctttatcgccaaacaatccggacttttaagggatctgtatgaagac
aaaactattgagggactcaatcggtatgaaaacgttcaggaattgctcaacgccatcaaa
gagtatgtggacaacccagaaaatgaagacaaatccttgggtgcttttcttcaggaaatc
gccttgctgaccgatgaagaccaaaacaaaaacaaccaggataccgttactatgatgacc
attcactcctccaaggggcttgaatttaagtatgtgtttgtggtaggaatggaagaagat
cttttcccttctcagatgatgatgcaaagcagagaagatctggaagaggaaaggcgattg
ttttatgtggcaacaaccagggccatggagaaattgtactttagctatgccctgacaagg
taccgttacggaaggttgctaaattgtgagcccagtaggtttctagaagaaattgacccg
acttttataaaagtcaataaaaaattaagcagtaagctctccagtagttttagggaaagc
gaaggaaagcaaggctttgtagggcttaagaaaaaaccggcaattagaaatactactaca
aaattacatgacccggggccaaactttaaaccttccaacaccaataatttgaaagaaggg
atgaaggtggaacatcccaagtttggttttggtaaagttcatggaattgagacggaaggc
accaatagaaaagcacatattcatttcgaccattttggagataaaacattattacttagc
tttgcaaagcttcgcatagtagaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (44)   

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