KEGG   Cordyceps militaris: CCM_03184
Entry
CCM_03184         CDS       T03108                                 
Name
(RefSeq) exonuclease Kem1, putative
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cmt  Cordyceps militaris
Pathway
cmt03008  Ribosome biogenesis in eukaryotes
cmt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmt00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CCM_03184
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CCM_03184
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmt03019]
    CCM_03184
   03009 Ribosome biogenesis [BR:cmt03009]
    CCM_03184
   03016 Transfer RNA biogenesis [BR:cmt03016]
    CCM_03184
   03036 Chromosome and associated proteins [BR:cmt03036]
    CCM_03184
Messenger RNA biogenesis [BR:cmt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     CCM_03184
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     CCM_03184
Ribosome biogenesis [BR:cmt03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    CCM_03184
Transfer RNA biogenesis [BR:cmt03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    CCM_03184
Chromosome and associated proteins [BR:cmt03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    CCM_03184
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 DUF2533
Other DBs
NCBI-GeneID: 18165211
NCBI-ProteinID: XP_006668399
UniProt: G3J984
Position
Unknown
AA seq 1394 aa
MGVPKFFRWLSERYPPISQLIAENRIPEFDCLYLDMNGIIHNCTHKDAGEDTTFRLSEEE
MFIRIFNYIEHLFGKIKPRQLFFMAIDGVAPRAKMNQQRARRFRTALEVEMAREKAIKEG
VEMPKEEPFDSNCITPGTAFMAKLSRQLQYFVNKKVSEDTDWQGCEIVLSGHEVPGEGEH
KIMEYIRNAKSQPGYNPNVRHCLYGLDADLIMLGLLSHDPHFSLLREEVTFGRASKNKSK
ELEHQNFFLLHLCMVREYLEMEFQELKQTQDSGLEFDLERVIDDFILMAFFVGNDFLPNL
PGLHINEGALADMFEIYKRILPEEGGYLHENGVLNIKRALRMIAELGKVEIKQFEHDVSD
EKWFASKQMEKKLQNTASVSAAKMPKSGQRIITTNQRDLWKQKIRPYVSKRSDDVLDLGI
DLNAGDKKFAQDIADAMHLDWSTKEDDNGFRHLIISFPPKPVGDNEDDEDEEEGNLAAYR
VIRTYDKAVVVDDSSGASPEKYEKLYEQKYQGWKTKYYLQKFPEWESTAYADEQTALCEN
YVEGLQWVLFYYYRGIASWPWFYKYHYAPLISDVAKGANAKLLFEKGQPFKPYEQLMGVL
PDRSKKIVPTAYHDLMTSPASPIIDFYPRDFELDMNGKKMDWEAVVKIPFIDEKRLLAAM
ETKNVLLSDEEKARNGFGVPLQFTYSSEVNFTYPSPLPGIFPEVQNCRCIENIFDLPNME
GLVYKSALTDGAKLKTDALAGFPSLHTLSHTAQLIEGYGINVFQADSRNPSVIVTLTETE
NRSKTETWKARLGKKCFVGFPFLQEAKVVKVQDELFTYTLGEDGVEVIMKDSTNRECADF
AKEADFLENWHAKRLGVRIGQVECLVGVHMLKGLFKTEEGALVKEYAENPSVRSIYASQT
IVDDVLNEDERFIEKAALPVEEEFPQGTRAFFLGDYAFGRPLEITSHVNGKTEIVVSVPK
TKEPEFSRSIIQQAEKANPYTPSFAIAKQLGVHPLVLSKITSSFQVLTSAGLKLNLGLNL
KFEGRKLKVLGYSRKSNTGWEFSRMAIQLIANYMVAFPDFFAAVQKHAQKSDIYDTDLWP
DQSVASQRLKDLSAWLKKQETSKFEKVTLDAEQLDSDIVMALAAAGEQVHRASQNSDIRK
LRGVPRSALLKPSDAEMVLGNQIFKLGDRVTFVAAAGKVPIATRGTVVGISRTPTALLLD
VVWDTSFMSGTTVGERAPMFRGQTVTASSVLNTTNRQVLSASSKSQQRQAAAAPNKTTGG
YGSVGVTQYKNAETPAPLRGGWSGAVNGRQSGGRGRGYGGANSEPRLQHSTMVYRDGPNG
SSQSTGQGNRGQSGHRGGAANGQNGEQKYGNVPPPGNLNVSRGGRGRGRGNRGRGNGNRG
RGGGVAGNQEAKPA
NT seq 4185 nt   +upstreamnt  +downstreamnt
atgggtgtgcctaaattcttccgatggctctccgagcgatacccccccatttcgcagctc
attgcggaaaacagaatacccgagtttgactgcctctatctcgacatgaacggtattatc
cacaactgcacgcataaggatgctggtgaggatacgaccttccgcctaagcgaagaggaa
atgttcatccgcattttcaactatatcgagcatctttttggcaagattaagcctaggcaa
ctctttttcatggccattgacggcgtcgcgccccgcgctaagatgaaccagcagcgggct
cgtcgattccgtaccgcgctcgaggtagaaatggcccgtgaaaaggccataaaggaaggt
gttgagatgccgaaagaggagccattcgacagtaactgtatcacgccaggtaccgcattc
atggcgaaactatctcgacaactacaatattttgtcaacaaaaaagtctcagaagatacc
gattggcaaggctgcgaaattgtactgtccggacacgaagtacctggcgaaggtgaacac
aaaatcatggagtacatccggaatgccaaatcgcaacctgggtacaatccaaatgtgcga
cactgcttatacggccttgatgccgatctgatcatgctgggcctcctcagccacgaccct
cacttttctttactgcgcgaggaggttacgtttggcagggcgtccaagaataagtccaag
gagcttgaacatcaaaacttcttcttgcttcacctatgcatggtcagagagtacctggaa
atggaattccaggaactgaagcaaacccaagattccggcctcgaatttgacttggaacgt
gtcatcgatgatttcatcctcatggccttcttcgttggcaatgatttcttgcctaatctt
cctggcttgcatatcaacgaaggtgcgctcgctgacatgtttgaaatctataagcgaatt
ctgcccgaggaaggtggctacctgcatgagaatggcgttctcaacatcaagcgtgcgctc
aggatgattgccgagcttggcaaggtcgagatcaagcagttcgagcatgatgtctctgat
gagaagtggtttgcctccaagcagatggagaaaaagttgcaaaacacagcatcagtttct
gcggcaaagatgcccaaaagtggacagcgcattatcaccaccaatcaacgagatctttgg
aaacaaaaaattcgtccctacgtctccaagcgctcagacgatgtgcttgaccttggcata
gatttgaatgcgggggataagaagtttgcacaggatattgccgacgctatgcatcttgat
tggtctacgaaagaagatgacaatggctttcgacacctcatcatctcattccctcctaaa
ccggtgggtgataacgaggatgatgaggacgaagaagaaggcaatcttgctgcttatcgc
gttataagaacgtatgataaagctgtggtggtagacgactctagcggggcttccccagag
aaatacgagaagctctacgagcagaagtaccagggttggaagaccaaatactaccttcaa
aaattccccgagtgggaatcaactgcctacgccgatgagcagacggctctctgcgaaaac
tatgtcgagggtttgcagtgggttctcttctactactaccgcggcattgcgtcctggccc
tggttttacaagtatcattacgcgcctctcatctccgacgtggctaaaggtgcaaacgca
aagctgctttttgagaagggacaaccgttcaaaccgtatgagcagctcatgggtgtcctg
ccagaccgcagcaaaaagattgtgcccacagcttaccatgacctcatgacaagccctgcc
tcgcccatcattgacttttatccgcgagatttcgaattggacatgaacggcaagaagatg
gattgggaagccgttgtcaagattcctttcattgatgagaagcgtctcttggccgccatg
gagaccaagaatgtgcttctcagtgacgaggagaaggctcgcaatggcttcggtgttcct
ctccaattcacctattcctccgaggtgaatttcacatacccttctccacttcccggcatc
ttccctgaagtacaaaactgccgctgtatcgagaatatctttgatctgccgaatatggag
ggactagtctacaaatcagctttgacggatggtgcgaagctgaagacggacgcattggca
ggcttcccctcgctgcacaccctctctcatacagcgcaactcattgaaggttacggtatc
aacgtttttcaggccgacagccgcaacccgagtgtgatagtgacgctgaccgaaaccgag
aatcgcagcaagacggagacctggaaggcaaggctaggaaagaaatgctttgtagggttt
cccttcctccaggaagccaaggttgtcaaggtccaggatgagctcttcacatacactctc
ggcgaggatggcgtggaggtaatcatgaaggacagcacaaaccgtgaatgcgcagacttt
gccaaagaggcggatttcctcgagaactggcacgcgaaacgtcttggtgttaggatcggc
caggttgagtgcctcgtcggcgtccacatgctgaagggtctcttcaagaccgaggaaggt
gctctggtaaaggaatatgccgaaaacccaagtgtccgaagcatatatgcatctcagacc
atcgttgacgacgttttgaatgaggatgagcgatttatcgaaaaggcggccctaccagtc
gaggaagagtttccccaaggcacaagagcgttctttctgggtgactacgcttttggacga
cctcttgaaattaccagtcacgtcaacggcaagacggaaatagtagtgtcggtcccgaag
accaaggagcccgagttctcgcgatccattatacagcaggctgagaaggcgaatccatac
acgccatcttttgcaattgccaagcagctcggagtacatcctctggttcttagcaaaatc
acgtcttccttccaggtgctgacctcggccgggttgaagttgaatctgggcctcaacctc
aagttcgaagggcgcaagctgaaggtgcttggatattcgcgtaaatcgaacactggctgg
gagtttagccgtatggctattcagctcattgccaattacatggtcgcgttccccgacttt
tttgcagcggtgcaaaagcacgctcaaaagagcgacatttacgacacagatttatggcct
gaccagagtgttgcatcccaacgactaaaggatctttctgcttggctcaagaagcaggag
acaagcaagttcgagaaagtcaccctggatgctgagcaactggactcggacattgtcatg
gcactagccgcagctggcgaacaagttcaccgagcgtcgcagaattcggacattcggaag
ctacgtggtgttcctcgttctgcactgttgaaaccgtctgatgctgaaatggtccttgga
aatcaaattttcaagctcggtgatcgcgtcacgtttgttgccgctgctggtaaggtgcct
atcgccaccaggggtactgtggtcggtatcagccgcaccccaacggcacttttactcgat
gttgtctgggatacctcctttatgagtggaacaactgtgggcgagcgtgctcccatgttt
cgcggacagaccgtaacagcctcgagcgtcctcaacacaaccaaccgtcaggtactctcg
gcctcgagcaaatcgcagcagcgacaggcggcagcagctccgaataagacgactggtggc
tatggctctgtaggtgtgacgcagtacaagaatgccgagacgccagcacctctgcgcggc
ggttggagtggcgctgtgaatggaaggcaatcaggtggtcgtggccgcgggtacggcggt
gcgaacagcgagcccaggcttcaacacagcaccatggtctaccgtgacggaccaaacggt
agctcacagagcaccgggcagggcaaccggggtcagagtggccaccgcggcggagccgcc
aatggacagaatggcgagcagaaatatggcaacgtgccgccgccaggaaacttgaacgtc
tcacggggtggtcgtgggcgtggtcgaggcaatagaggtcgaggtaacggcaatcgtgga
agaggaggcggtgttgctggcaatcaggaagccaagccagcatag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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