KEGG   Cordyceps militaris: CCM_07429
Entry
CCM_07429         CDS       T03108                                 
Name
(RefSeq) RNA polymerase II transcription factor
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
cmt  Cordyceps militaris
Pathway
cmt03022  Basal transcription factors
cmt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CCM_07429
  09124 Replication and repair
   03420 Nucleotide excision repair
    CCM_07429
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmt03021]
    CCM_07429
   03400 DNA repair and recombination proteins [BR:cmt03400]
    CCM_07429
Transcription machinery [BR:cmt03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CCM_07429
DNA repair and recombination proteins [BR:cmt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CCM_07429
SSDB
Motif
Pfam: BSD PH_TFIIH Cupin_8 PP1c_bdg
Other DBs
NCBI-GeneID: 18169440
NCBI-ProteinID: XP_006672633
UniProt: G3JPS6
Position
Unknown
AA seq 641 aa
MATTPAGRTLYKKKDGILTITADLQTVTWTPNTGGPPTVSLPVLRITNLQQTPDGAPKVM
LKIFELSSSGGDATTYLFHFNTDEAKSEASSFKDVLSRLLSEARSGDPNVPRPAGSATPQ
GNTGAGGSASATMAFSSAVNAQQSSTRWYDDQQLKNDIELQRSLMKKDLSLNETYMDALS
TKPESISVATFNSQFWSTRTNLLRAYAIESNQKKGPYNVLSTVKPRTVDGEMKLNISVEQ
VQMIFAQHPLVKRIYNENVPKLSEADFWSRFFLSRLSKKLRGERVTENDTNDAIFDKYDV
NENLQHVQSKIMSQHVPHIIDIEANEENQGGFKSGNAKDVEMRPRANIPIVQTLNSLSEK
IMANVAPSDTPNDDTAQYYREQGLRDLHGDAVEHRIMLNVKEQNKFFAKHDSSSSSNAKV
FANQNTANVLLKMQGVFKGIPIDTVAGMDLQAAINFDDGSDSEEEERPGKKPSSARRAII
GAEKDVLDGILQQRSQKYGHVSDASTPMGLPLPIVERCTLTHATTVEFLHQFWDAFLSGD
PDRAGEVQYLAESLKRSTNRIQVVADAAAHERDEAIRNAKQEIRDHFEKTGKKIRWKSDM
VGGGRDAVVKMMQPTLDALDKAQADYTRALAAEGVQISTET
NT seq 1926 nt   +upstreamnt  +downstreamnt
atggcgacaactcctgctggccgcactctgtacaagaagaaggatggcatactaaccatc
accgccgatcttcaaaccgtgacatggacgccgaacactggcggtcctcccaccgtgtca
ttgcctgttctcagaattaccaacttgcagcagacgccagatggagcgcctaaagttatg
ctcaagatattcgagctgagttccagcggcggtgatgctacaacatatctctttcacttc
aacactgatgaggctaaatcggaggcgtcctccttcaaagatgttctctctcggctgctt
tcggaagcacggagcggcgaccctaatgttccacgcccagcaggatcagctacaccacaa
gggaacactggtgctggcggcagtgcctcagcaaccatggcattttcaagtgccgtgaac
gcacagcagtcctcgactcgctggtacgacgaccagcagctaaagaatgatatcgagctg
cagcgatctctgatgaaaaaggacctgagcctcaatgaaacgtacatggatgcgctttcc
accaagccggaatcgatatccgtcgccacattcaactcgcaattctggtccaccagaaca
aatctgctacgcgcgtatgccatcgagtcaaatcagaaaaaaggcccttataacgtcctc
tcgaccgtcaagccgcgaacagtggatggtgaaatgaaattgaatatcagtgttgagcag
gtccagatgatctttgctcaacatccgctcgttaagcgtatatacaatgaaaacgtccca
aagctgtctgaggccgacttttggtccagattttttctcagtcgcctatcaaagaagcta
cgaggtgagcgtgttaccgaaaacgacacaaacgacgccatttttgataaatacgacgtc
aacgagaacttgcaacatgtccagagcaaaatcatgtcgcagcatgtccctcacatcatt
gatattgaggcaaacgaggaaaaccaaggggggttcaaaagcggcaacgccaaggacgtt
gaaatgcggcctagggcgaatattcccattgtacagacgctaaacagtctcagtgagaaa
atcatggcaaatgttgcgccctctgatactccaaacgacgacacggctcagtactacaga
gaacaggggctgcgggatttacatggtgatgctgtagagcatcgcatcatgctcaacgtc
aaggaacaaaacaagttttttgcaaagcatgattcctcgtcatccagcaatgccaaggtc
tttgcgaaccaaaacactgccaacgtcttgctgaaaatgcaaggcgttttcaagggtatc
cctatcgatactgttgctggcatggacctgcaggccgctatcaactttgacgacggcagc
gacagcgaagaggaggagcggcccgggaagaagccgagcagcgcgcggcgtgccatcatc
ggcgccgaaaaggacgtcttggacggcatcctgcagcagcgctcgcaaaaatatggccac
gtctccgacgcatcaacgcccatgggactgcccctccccatcgtcgagcgctgcacgctg
acgcacgccacgacggtcgagtttctgcaccagttctgggacgcgttcctgtccggcgac
ccggaccgcgccggcgaggtgcagtacctcgccgagtcgctcaaacgctcgaccaaccgc
atccaggtcgtcgccgacgcggccgcccacgaacgcgatgaggccatccgcaatgccaag
caggagattcgtgaccactttgagaagacgggcaagaagattcggtggaagtctgacatg
gtcggcggcggtcgtgacgccgtcgtcaagatgatgcagcccacgctcgacgccctcgac
aaggcccaggcggactatacgcgagcgctggctgcggagggtgtgcagatatcgacggag
acgtaa

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