KEGG   Chelonia mydas (green sea turtle): 102931340
Entry
102931340         CDS       T02989                                 
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X6
  KO
K15271  ATP-dependent DNA helicase HFM1/MER3 [EC:5.6.2.4]
Organism
cmy  Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cmy03036]
    102931340 (HFM1)
Enzymes [BR:cmy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     102931340 (HFM1)
Chromosome and associated proteins [BR:cmy03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    102931340 (HFM1)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_C ResIII AAA_22
Other DBs
NCBI-GeneID: 102931340
NCBI-ProteinID: XP_037763608
Position
8:74220329..74336001
AA seq 1323 aa
MLKSTATVFSLDNLFFERPDANQKYLEHEEPKNWYLAPAPSVTGIPTTQELQKELEKNNC
LDGKEVKVQSFPDASKTFGVEGTVEKDLGFLRAVTEIPAQFRNIFKEFPYFNYIQSKALD
DILYTDRNFVICAPTGSGKTVMFELAITRLLMEVPMPWLNIKIVYMAPIKALCSQRFNDW
KDKFGPIGLSCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLI
DEVHVVKDESRGATLEVVVSRMKTIQSSLSRISENPDMLTPMRFVAVSATIPNAEDIAEW
LSDGMRPAVCLKIDESHRPVKLRKIVLGFPCSSNQTEFKFDLTLNYKIASVIQTYSEQKP
TLVFCATRKGVQQAASVLAKDAKFIMTMEQKQRLQKYAKSTKDTKVRDLLMCGVAYHHAG
MEISDRKIIEGAFTMGDLPVLFTTSTLAMGVNLPAHLVIIKSTMHYVGGMFQEYSETDIL
QMIGRAGRPQFDTTATAVILTRLSTREKYVQLLNGADTIESSLHKHLVEHLNAEIVLHTI
TDVKIALEWIRSTFLYIRVLKNPVHYGFSCGLDTVGIEAKLQELCLKNLNNLSSLDLIKM
DEEFNFKPTETGKLMAWYYIAFDTVKQFSTINGTETLSELITMISGCVEFSDVKLRTNEK
KILNTLNKDKNRITIRFPMEGKIKTREMKVNCLIQAQLGCIPIQDFTLTQDTGKIFRHGL
RVTKWLSDFLASRKNNFPALLNSLILAKCFRCKLWENSLHVSKQLEKIGVTLSNAMVNAG
LTSFKKIEDANTRELELILNRHPPFGNQIKESVLHLPKYELGIEQLAKYSDTVAEILVTI
ILTNFEQLQIKRTAPDFHYVTLLIGDADNQVVFKQKIMDSVLLKNGNWTKKIEVKRALKS
EELSINLISSEYVGVDIQQNYTAFYLGPKRFGNEVVLQRKLEAESSPMYHASSVRSTGAR
KDTGGACNRETTYMKLGNRECSHHCKNKDVCGHDCCKIGVSQKSELKRGSKFSSYLADLR
NRNAISSVPPVKRLKMQIQLNKSQNVDLKQFVFTPKSLLPALPRSDYTQSSGSASREHWN
NVNILGRPQNQLQSESYEKSNFSWEHSVTVSEESHQTMTSKKNFKESLMHNLTNADKSSS
WFSEALNVNFELGDEVWDDFDDDKLIHASSFFTGVESREDLGSGNTYFQSTIECKPLFQN
SESKVTSDISKNFCLLRDKSDVHLQNSASSTLKSPSEKKLSVQYGNTSTFSFQKRKHPNP
PQELKNREFSPNSEIISSSSQFIGKENFFICNKERKKEIDVRSLSDDETNDVKPFLGIFD
GIF
NT seq 3972 nt   +upstreamnt  +downstreamnt
atgctgaaatctacagccactgtcttttcattggataatttattttttgaaagaccagat
gcaaatcaaaaatatttagaacatgaagagccaaaaaattggtatcttgcacctgctcca
tctgttactggaattccaaccactcaggagttacaaaaggaattggaaaaaaataactgt
ctagatggaaaagaagttaaagtacagtcatttcctgatgcttcaaagacttttggcgtg
gaaggaaccgtagaaaaagatttggggtttttgagggctgttacagaaatccctgctcag
tttagaaatattttcaaggaattcccatattttaactacatacagtccaaggctttggat
gatattctttacacagataggaactttgtgatttgtgctccgactggttctggaaaaact
gtaatgttcgaactagctattacaaggttactaatggaagtgccgatgccttggttaaat
attaaaattgtctatatggctccaataaaagctctctgcagtcagcgttttaatgattgg
aaagataaatttggacctatagggctcagctgtaaagaactgacaggagacacagtgatg
gatgatttatttgaaatacaacatgctcacattattatgaccacaccagaaaaatgggat
agcatgactagaaaatggagagacaactctttagtccaattggtacgactgttcctcatt
gatgaggtacatgttgtgaaagatgaaagccgtggtgcaacacttgaggttgtagtcagt
cggatgaagactatacagtcttccctttcgcgtatctcagagaatcctgacatgcttact
cccatgagatttgtggctgtttctgcaacaatcccaaatgctgaggatattgcagaatgg
ctttcagatggtatgagacctgctgtatgtctgaaaatagatgaaagtcatcgacctgtg
aagcttcgcaaaatagttcttggatttccctgcagtagcaaccaaacagaattcaaattt
gacttaacacttaactacaaaatagctagtgttatacaaacatactctgaacaaaaacca
acccttgtgttttgtgccacaagaaaaggagtacagcaggctgcttcagttcttgcaaaa
gatgctaaatttattatgactatggaacagaaacaaagattacaaaagtatgcaaagtca
acaaaagataccaaagtgagagatcttttaatgtgtggtgtggcttatcatcatgctggt
atggagatatctgatagaaaaataattgaaggagcttttactatgggagacttaccagta
ctttttactactagtaccttagctatgggagtaaatttacctgcacatctggtaattata
aaatctacaatgcactatgttggaggaatgtttcaagagtacagtgaaacagatattctg
caaatgattgggagagcagggaggcctcaatttgacactaccgctacagcagttatcttg
actaggttaagtacaagagagaaatatgtacagctgttaaatggtgcagatacaatagaa
agcagtttgcacaaacatcttgttgagcatttaaatgcagaaatagtgttgcacaccatc
acagatgtgaaaatagctttggaatggatacgatcaactttcctatacatccgagttttg
aaaaatccagttcattatggtttttcgtgtggattagacacagttggaattgaagcaaaa
ttacaagaattgtgtttgaagaatttgaacaatttgtcatctcttgatttgatcaagatg
gatgaagaatttaatttcaaacctacagagactggaaaactaatggcttggtactatatt
gcatttgatacagtgaaacagttttccacaattaatggaacagaaactttatcagaactg
atcacaatgatatccggctgcgttgaattttcagatgtcaagttaagaacaaatgagaag
aagatattgaacacattgaataaagacaagaacaggataactatcaggtttccaatggaa
gggaagataaaaacaagagaaatgaaagtaaactgtcttattcaggctcaattaggatgc
attcctattcaagacttcactttgacacaagatacaggcaaaattttcagacatggctta
agagttactaaatggttgtctgactttctggcatcacgtaaaaacaattttcctgcatta
ttaaactctttgattttagctaaatgtttcaggtgcaaactgtgggaaaactctctgcat
gtatccaaacagcttgaaaaaattggtgtaacactgtcaaatgcaatggtaaatgcaggt
ctgacatcatttaaaaaaattgaagatgcaaatacaagggaacttgaattgattttaaac
agacatcctccttttggaaaccaaataaaagaatctgtgctacatctgccaaaatatgaa
cttggcattgaacagcttgcaaaatacagtgatacagtggctgaaatcttagtgaccatc
atattaacaaactttgaacagcttcagattaagagaactgcaccagattttcactatgta
accttactcataggagatgctgataatcaagtggtttttaaacagaaaattatggattct
gtcttgctgaaaaatggaaattggactaaaaaaattgaagtgaaaagagctcttaaatct
gaggaacttagtataaatttaattagctctgaatatgttggggtggatattcagcagaac
tatacagccttttacttaggaccaaaaaggtttggaaatgaagtggttttacaaagaaaa
ttagaagctgagtcttcacctatgtatcatgcctcttcagtaagatcaacaggagcgaga
aaggatacaggaggtgcctgtaaccgagagaccacctacatgaaacttgggaacagagaa
tgcagccatcactgtaaaaataaagatgtatgtggacacgactgctgtaaaattggagtt
tcacagaaatctgagttaaagagaggttcaaagttttcttcatacctagctgatttaagg
aacagaaatgcaatttcatcagttcccccagtcaaacgactaaagatgcagatacagtta
aataaatctcaaaatgtggatctgaaacaatttgtttttacaccgaaatctttgctgcca
gcattgccaaggtctgactacacacagtcttctgggtcagcttcacgagaacactggaat
aatgttaacatccttggtagacctcagaaccaactgcaatcagagagttatgaaaagagt
aatttctcttgggaacattctgtgactgtaagtgaggagagccatcagacaatgacgtca
aagaaaaattttaaagaatctttaatgcataatttgactaatgcagataaaagcagctct
tggttttcagaggctttgaatgtgaactttgaattgggagatgaagtttgggatgatttt
gatgatgacaaattaatacatgctagcagctttttcactggtgtggagagtagagaagat
ttaggatctggaaacacctactttcaaagtacaatagaatgtaaaccactgttccagaat
tcagagagcaaagtaacaagtgacatttcaaaaaatttttgcctgttacgagataagtct
gatgttcatctacaaaattctgcctcttccacattaaaatcaccatcagaaaagaaatta
tctgtacaatatggaaatacaagtactttcagcttccaaaaaagaaaacatccaaatcct
ccacaagagttgaaaaacagagagttttctccaaactcagaaataatctcaagttcttct
caattcattggaaaggagaatttttttatttgcaacaaagaaaggaaaaaagaaattgat
gtcagatctctttcagatgatgaaaccaatgatgttaagccttttcttggaatatttgat
ggcattttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (5)   
   Pfam (5)   
All databases (37)   

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