KEGG   Chelonia mydas (green sea turtle): 102931649
Entry
102931649         CDS       T02989                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4 isoform X1
  KO
K10755  replication factor C subunit 2/4
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy03030  DNA replication
cmy03410  Base excision repair
cmy03420  Nucleotide excision repair
cmy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102931649 (RFC4)
   03410 Base excision repair
    102931649 (RFC4)
   03420 Nucleotide excision repair
    102931649 (RFC4)
   03430 Mismatch repair
    102931649 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmy03032]
    102931649 (RFC4)
   03036 Chromosome and associated proteins [BR:cmy03036]
    102931649 (RFC4)
   03400 DNA repair and recombination proteins [BR:cmy03400]
    102931649 (RFC4)
DNA replication proteins [BR:cmy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102931649 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    102931649 (RFC4)
Chromosome and associated proteins [BR:cmy03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102931649 (RFC4)
DNA repair and recombination proteins [BR:cmy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102931649 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    102931649 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_11 AAA_22 AAA_16 AAA_30 DUF815 AAA_28 AAA_24 AAA_14 Mg_chelatase RuvB_N AAA_23 AAA_5 SLFN-g3_helicase DNA_pol3_delta AAA_19 bpMoxR AAA_3 ResIII AAA_18 AAA_7 Gp44_lid RNA_helicase nSTAND3
Other DBs
NCBI-GeneID: 102931649
NCBI-ProteinID: XP_037765470
Position
9:complement(9071456..9091205)
AA seq 365 aa
MQAFLKGPSAISTRAPASKERGAAAAAGGSGEGKRLKPIPWVEKYRPKCVDEVAFQEEVV
AVLKKSLEGADLPNLLFYGPPGTGKTSTILALARELYGPELFRQRVLELNASDERGIQVI
REKVKIFAQLTVSGSRSDGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI
CNYISRIIEPLTSRCSKFRFKPLTDKIQQQRLLAVSEKENVKVSNEAVSCLVKVSEGDLR
KAITFLQSATRLTGGKEISEKVVTEIAGVVPKETIDGLLSACQSGSFEKLETVAKNLINE
GYAVAQLINQLHDDIVEREDLPDKQKSIIAEKLAEVDKCLTDGADEYLQLISLCAVVMQQ
LTQNG
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgcaggcgtttctgaaaggcccgtccgccatcagcaccagagcgccggcgtccaaggag
cgaggcgcggctgccgccgcgggaggcagcggcgagggcaagaggctcaaacccatccct
tgggtggagaaatatcgtccgaagtgtgtggatgaagttgcattccaagaggaagttgtt
gctgtgctgaaaaaatccttagagggagctgatcttcccaatctcttgttttatggccca
cctggaactggaaagacttccactattttggcattagccagagaactctatggacctgaa
ttgttccgacagagagttcttgagttaaatgcttctgatgaacgtggaatacaagtgatt
cgagagaaagtgaagatatttgctcagctaactgtgtctggaagtcgttcagatggtaag
gtttgtcctccttttaagattgtgatcctggatgaagcagactctatgacttcagcggct
caggcagccttgagacgcactatggagaaagaatcaaaaacgacacgcttctgccttatt
tgtaattacatcagcaggataattgaacctttaacatctcgatgctccaaattccgtttc
aagcccctgacagataaaatccaacagcagagactactggctgtttccgaaaaggaaaat
gtgaaagttagcaatgaggcagtatcttgtcttgttaaagtgtcagaaggagacttaaga
aaagcaatcacatttcttcaaagtgctactcgattaacaggtgggaaagagatctcagag
aaggttgtcaccgaaattgcaggggttgtccctaaggaaacaattgatggactactatct
gcctgtcaaagtgggtcttttgaaaaactggaaactgtagcaaagaatctgataaatgaa
gggtatgctgttgctcagcttataaaccagcttcatgatgatattgttgagagagaggat
ctccctgacaagcagaaatctattattgcagagaagcttgctgaggtagacaaatgcttg
acagatggtgcagacgagtacttgcaattgatcagtctctgtgctgttgtgatgcagcag
ctaactcagaatggctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (28)   
   Pfam (28)   
All databases (54)   

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