KEGG   Chelonia mydas (green sea turtle): 102933682
Entry
102933682         CDS       T02989                                 
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
cmy  Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cmy01009]
    102933682 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmy03019]
    102933682 (HDAC6)
   04131 Membrane trafficking [BR:cmy04131]
    102933682 (HDAC6)
   03036 Chromosome and associated proteins [BR:cmy03036]
    102933682 (HDAC6)
Enzymes [BR:cmy01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102933682 (HDAC6)
Protein phosphatases and associated proteins [BR:cmy01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102933682 (HDAC6)
Messenger RNA biogenesis [BR:cmy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     102933682 (HDAC6)
Membrane trafficking [BR:cmy04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    102933682 (HDAC6)
Chromosome and associated proteins [BR:cmy03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     102933682 (HDAC6)
SSDB
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Other DBs
NCBI-GeneID: 102933682
NCBI-ProteinID: XP_037744519
Position
23:complement(18911121..18917528)
AA seq 1028 aa
MKRGGRKGPPPRRSPGLPETKRRGRAQRMNKEAEELESGLRRLDLSVPGAVPVGTGLAFD
ERLTDFHCLWDDSFPERPERLAAVKGKLLQCGLWERCVPVEARLATEEEILLAHSQEYVE
LMKSTEQMSEQELRALSETYDSVFLHPDSYRCARLAGGCVLRLLEKVQSGELRNGLALVR
PPGHHAHRDKMDGYCMFNHLAIGARYAQQKLGVERVLIVDWDVHHGQGTQFLFEEDPSVL
YFSVHRYEQGRFWPHLPASDSPAVGQGRGEGFNVNVPWNAVGMRDGDYLAAFLHVFLPVA
FEFQPQLVLVAAGFDSVLGDPKGEMAVSPGCFAHLTHLLMALAGGKMLLSLEGGYNLNSL
AEGVCAALRTLLGDPCPRLEPPIAPCRSALSSVSGTLAIHEKYWRSLQRGETDTPPEAVD
EEPAPVEPPDPPEVPRPLPAARTGLVYDERMTEHYNMWDSQHPELPQRVSRIFQRHGELR
LTERCRRIPARSAEEEELRMCHSPAYVQTVKATASMKPRDLHRQGDQYNSIYICTSSYEC
ARLAAGSAFNAVQAVLEGEVQNAVAIVRPPGHHAESDTACGFCFFNSVALAARFAQRLAG
RPMRVMILDWDVHHGNGTQHMFEEDPSVLYVSLHRYDRGSFFPTSEDADADRVGVGPGRG
FTLNVPWNSPHMGDAEYLAAFHRLVLPVAYQFDPGLVLVSAGFDAARGDPLGGCLVSPEC
YAHMTHLLLGLAGGRVVLVLEGGYNLVSISESMTMCTRTLLGDPLPELGRLRAPHPSALQ
SLARASAVHRKYWTCLRLDAPIQEDSRPQSRQPGPIHEDSPPEAPSGGSQSPPGSEGSVD
DILRLGALCLSGEVGTDSGSPQLSPDSALVGGASPGEAEPPAAEESEDPPSLLDEAAALL
PTASVSLGVEFADTGTLYAVTPLPWCPHLDSLQPLPPAGLDVLAPCEECGSRGENWVCLA
CYQVLCGRYINQHMLAHGSLSGHPLVLSYADLSVWCYACQSYVHHLTLLPAKALAHRMKF
GADPAAGL
NT seq 3087 nt   +upstreamnt  +downstreamnt
atgaagcggggtggccggaagggccccccgccccgtcgcagccctgggctccccgaaacc
aagcgccgcggccgagcccagaggatgaacaaagaggcggaggagctggaatcggggctg
cggcgcctggatctgagcgtgccgggggcggtgcccgtggggacgggtctggcctttgac
gagcggctcactgacttccactgcctgtgggatgacagcttccccgagcgcccggagaga
ctcgcggccgtcaagggaaagttgctgcaatgcggcctgtgggagcgctgtgtcccggtg
gaggcccggctggctaccgaggaagagattctgctagcccacagccaggagtacgtggag
ctgatgaagtcgaccgagcagatgagcgagcaggagctcagggccctgtcggagacctac
gactccgtcttcctgcacccggattcgtaccgttgcgcccggctggctggtggctgcgtt
ctgcggctgctggagaaggtgcagagcggggagctgcgcaacgggctggcgctggtccgg
ccgccaggacaccacgcccaccgagataagatggacggttactgcatgttcaaccacctg
gccatcggggctagatatgcccagcaaaaactgggagtggaacgagtcttgatcgtcgac
tgggacgttcaccacgggcagggcacccagttcctcttcgaggaggatcccagcgttctc
tatttctccgtccatcgctatgagcaggggaggttctggccccacctgccagcgtccgac
agccccgccgtggggcagggccgtggagaggggttcaacgtcaacgtgccgtggaacgcg
gtgggaatgagggacggtgattatctcgctgcctttttacatgtcttcctgccagtggcc
tttgagttccaaccccagctggttctggtggccgccgggttcgactctgtgctcggggac
cccaagggcgagatggctgtgtcgcccgggtgcttcgctcacctgactcatctgctgatg
gccctggcgggcggcaagatgctgctgtctttggagggtggctacaatctgaactccctg
gctgagggggtctgtgcggccctgaggaccctcttgggggacccctgtccccggctggag
ccgcccattgccccctgtcgcagcgctctgagctccgtgtctgggacgctcgcgatccac
gagaaatactggcggagcctgcagagaggggagaccgacaccccccctgaggctgtggac
gaggagccagcccccgtggaacccccagaccctcctgaggtgccgcgacccctcccggct
gcccgcaccgggctggtgtatgacgaacgcatgacggagcattacaacatgtgggacagc
cagcacccagagctgccccagcgggtctcccgcatcttccagcgccacggggagctccgg
ctcacggaacggtgccgccggatcccggcccgcagcgctgaggaagaggagctgagaatg
tgtcacagcccggcgtacgtgcagacggtgaaggccacggccagcatgaagccacgggac
ctgcatcgccagggggaccagtacaactccatctacatctgcaccagctcctacgagtgt
gcccggctggccgccggctcggccttcaacgccgtgcaggccgtgctggagggcgaggtg
cagaatgccgtggccattgtccggccccccgggcatcacgccgagtccgacacggcctgt
ggcttctgcttcttcaattcggtagccctggcagctcgtttcgctcagcgcctggcggga
cggcccatgagggtgatgatcctggactgggatgttcaccacggcaacggtacccagcac
atgtttgaggaagatccgagcgtgctgtacgtctctctgcaccgctacgaccgcggctcc
ttcttccccacctcggaggacgccgacgccgaccgggtgggggtggggccgggccgcggc
ttcaccctcaacgtgccctggaacagcccccacatgggcgacgccgagtacctggccgcc
ttccaccgcctggtgctgcccgttgcctaccagttcgacccggggctggttctggtgtcg
gctgggttcgatgccgcccgcggcgacccactggggggctgcctggtgagccccgagtgt
tacgcccacatgacccacctcctgctggggctggcggggggccgggtcgtgctggtactg
gagggaggctacaacctggtgtctatctccgaatccatgaccatgtgcacccggaccctg
ctgggggaccccctgcccgagctggggcgcctgcgagctccccaccccagcgccctgcag
tcgctggcccgggcgagcgccgtgcaccgcaaatactggacctgcctgcggctggatgcg
ccgatccaggaggactcgaggccccaatccaggcagccgggccccatccatgaggactcc
ccaccagaggccccctcggggggctcccagagccccccaggctccgagggctccgtcgac
gacatcctgaggctcggagccctctgcctcagcggtgaggtggggaccgactcgggctcc
ccccagctgagccctgactccgccctggtgggcggggcttcccctggagaggcggaacct
ccagctgcagaggagtcagaggacccccccagcctcctggacgaagcagccgccctgctc
cccaccgcctctgtcagcctgggggtggagttcgcagacacggggacgctctacgctgtg
acccctctgccctggtgcccccacctggactcgctccagccccttcccccggccgggctg
gacgtgctggcgccatgtgaggaatgcggcagccggggcgagaactgggtctgcctggcc
tgttaccaggtgctctgcgggcgttacatcaatcagcacatgctggctcatggctccctt
tccggccaccccctggtgctgagttacgccgacctgtcggtctggtgctacgcctgtcaa
tcatacgtccatcacctgaccctgctgccagccaaggccctggctcaccgcatgaagttc
ggggcggacccggccgctgggctctga

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Ontology (6)   
   KEGG BRITE (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

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