KEGG   Chlamydia muridarum Nigg3 CMUT3-5: TAC_03090
Entry
TAC_03090         CDS       T03684                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cmz  Chlamydia muridarum Nigg3 CMUT3-5
Pathway
cmz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cmz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TAC_03090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmz03021]
    TAC_03090
   03400 DNA repair and recombination proteins [BR:cmz03400]
    TAC_03090
Enzymes [BR:cmz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TAC_03090
Transcription machinery [BR:cmz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TAC_03090
DNA repair and recombination proteins [BR:cmz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TAC_03090
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid
Other DBs
NCBI-ProteinID: AHH22976
Position
complement(700862..705052)
AA seq 1396 aa
MFKEGSRDDAALAKEGLFDKLEIGIASDVTIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECYCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERVIYYEEYVVIDPGNTDLVKKQLLNDAKYREVVEKWGKDAFV
AKMGGEAVYDLLKSEDLESLLGELKDRLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWM
VLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKTKVFKDEVEV
LRALNAGGFILKDEICGSRRDETGRGIHIHEAIKVRIDGQIIETTPGRVFFNTIVPKELG
FQNYSMPSKRISELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMGLKDVRIPEIK
KEILKDAYDKVAVVKKQYEDGIITDGERHSKTISIWTEVSDLLSNALYAEIKKQTNSKHN
PLFLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGAR
KGLADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEVSTIRQGSEELLPLKDRIY
GRTVSENVYQPGDKSNVLAYAGDVLTSSQAEAIDDAGIDSVKIRSTLTCESRRGVCAKCY
GLNLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVAECDGILVY
LDLRFVVDQEGNNLVLNKMGALHLVRDEGRSLSEYKKLLSTKSIESLATFPVELGAKILV
DDGAAVTAGQRIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVTNKNTGLVELIVKQHR
GELHPQIAIYADANMQELVGTYAIPSGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGG
LPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEVTGMEEEHLISLTKHLI
VQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIV
RQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTE
SFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQHLEKEQ
EDLVFDFDSEFESVAG
NT seq 4191 nt   +upstreamnt  +downstreamnt
atgttcaaagaaggttctcgagacgatgcagccctagcaaaagaagggttgtttgataag
ttagaaattgggattgcttcagatgtgactattcgcgacaagtggtcttgtggcgaaatt
aagaaacctgagacgatcaattatcgcacattcaagcctgaaaaaggcggattgttttgt
gagaagattttcggtcctactaaggactgggaatgttactgcggtaaatacaagaagatt
aagcacaaaggtattgtgtgtgatcgttgcggagtggaagtcacgctgtctaaggtgcga
cgagaaagaatggctcatattgaattagctgttcctattgttcacatttggtttttcaaa
actactccatctagaattggtaatgttttgggaatgacagcttcggatttggagcgtgta
atttactacgaagaatacgttgtcattgatccaggtaatactgatcttgtgaaaaaacaa
cttctgaatgatgcaaaatatcgagaagttgttgagaaatggggtaaagatgcttttgtc
gccaaaatggggggagaagctgtttatgatcttcttaaatccgaggatttagaaagcctc
cttggtgagcttaaagatcgtttgagaaaaacaaaatcccagcaagcaagaatgaagctt
gctaagcggttgaagattgtagaagggtttgtatcttcctctaaccgtccagaatggatg
gtcttgaagaacatccctgttgttccaccagatcttcgtcctttagttccattggatgga
gggcgttttgctacttcagatctgaacgatttatatcgtagggttattaatcgaaataat
cgtttgaaagctatcttgcgcttgaagactcctgaggtaattgttcgcaatgagaaacgg
atgttacaggaagctgtggatgctctgtttgataatggacgtcatggacatcctgttatg
ggagcaggaaatagaccccttaagtctctatcagagatgttaaaagggaaaaatggtcgt
ttccgacaaaacttattaggtaaacgagtagactactctggccgttctgttattattgtt
ggtcccgagttgaagtttaatcaatgtggtttgcccaaagaaatggcgttagagttgttc
gagccattcattatcaagcgactaaaagatcagggtagtgtttatactatccgttcagca
aagaaaatgattcaacgaggcgcaccagaggtttgggacgttcttgaggaaatcattaaa
ggacacccagtcttattgaaccgagctcctactttgcaccgattgggaatacaggctttt
gagccagtgttgattgaagggaaagcgattcgggttcacccattagtgtgtgcagcgttt
aacgccgatttcgatggagaccaaatggcggttcacgtgcctctttctattgaagctcag
ttagaggcgaaggtgttaatgatggctcctgataacattttcttgccatcttctggaaaa
cctgttgccacaccttctaaggatatgacattgggcatctattatttgatggctgatcca
acgtattttcctgaagaacacggagggaaaactaaagtatttaaagatgaagtagaagta
cttcgtgctttgaatgctggaggttttatccttaaggatgagatatgtggttctcgtcgg
gatgaaactggacgagggattcatattcatgaagccattaaagttcgaattgatggtcaa
attattgagaccactcctggccgcgtatttttcaacacaatcgttcctaaagaacttggc
ttccaaaactatagtatgccaagtaaacgtatcagtgagctaatcttgcaatgctataag
aaagttggtttagaagctactgtacgctttttggatgatttgaaagagctaggtttcgtg
caatctacgaaagctgcaatttctatgggattgaaggatgttcgaattcctgaaattaag
aaagagattttgaaagacgcttacgataaggttgctgtcgttaagaaacaatatgaagac
ggtattattaccgatggggagcggcattccaagacaattagtatctggactgaagtttcc
gatcttttatctaatgcgttgtatgctgagatcaaaaagcaaaccaatagcaaacataat
ccgctgttcttaatgattgattctggagctagaggaaacaaatctcagttgaaacagctt
ggagctttgcggggattgatggctaaacctaacggagccattattgaatctccaattact
tctaacttccgagaaggattgacagtgcttgagtactctatttcttctcacggagctaga
aaaggattagcagacacagcgcttaaaactgcggattccggatatttaacccgtcgtttg
gtggacgttgctcaggatgttatcattacagaaaaagattgtggtacattgaatcatatt
gaggtgtcgacaatccgtcaggggtctgaagaattactgcctttgaaagaccgtatttat
ggacgtacagtttctgaaaatgtctatcagccaggagataaaagtaacgttttagcctat
gctggggatgtattaacttcttcccaagctgaggctattgatgatgcaggtattgatagc
gtaaaaatccgatctacgcttacttgtgaaagccggcgaggagtttgtgccaagtgttat
ggtttgaaccttgctaatggccggctgattggattaggagaagctgttggtattattgct
gctcaatccattggggaacctggaactcagttaacaatgagaacgttccaccttgggggg
attgctgcgacatcctcaactccagaaatcgttgccgagtgtgatggaattcttgtttac
ttagacttacgctttgttgtagaccaagaaggtaataatcttgttctgaataagatggga
gctcttcacttggtccgtgacgaaggacgaagtttgagtgaatacaagaagcttttgagt
acgaagtccatcgaaagcttagcgacattcccagtagaattgggagctaagattttggtt
gatgacggtgcagctgtcacggccggacaaagaattgctgaagttgagctccacaatatc
ccaattatctgtgataagccaggattcgttcactatgaagatttagtggaaggagtttcc
acagagaaagtcacgaataagaacacgggtcttgtcgaattaattgtgaaacaacacagg
ggagaattgcatcctcagattgctatatatgctgacgccaatatgcaggaattggttggt
acatatgccattccttctggggctattatctctgttgaagaggggcaacgtattgctcca
ggaatgttgttagcgagattgcctcgaggagcaattaaaacgaaggatattactggtggt
ttgcctagggttgcagagttagtagaagctcgtaagcctgaagatgccgcggatattgct
aagattgatggggttgtagacttcaaaggtatccagaagaataagcgtattcttgttgtg
cgtgatgaagttacgggaatggaagaagagcatctgatttctttgaccaaacacttgatc
gtgcaacgtggagatagcgtaatcaaaggtcagcagttaacggacggtttagtcgttcct
catgaaattcttgaaatttgtggggttcgtgaattgcagaaatatttggttaatgaggtt
caagaagtataccgactgcaaggtgtggacattaatgacaaacacattgaaattattgtt
cgacagatgttgcagaaagtgcgtattactgatccaggtgatacaaccttgttgttcgga
gaggatgtcgataagaaagagttttatgaagaaaaccgccgtacggaagaggatggaggg
aaacctgctcaagctgttccagtgctgcttggaatcactaaagcttctttgggaacggag
tcctttatttccgcggcctcattccaggacacaactcgagttttaacagatgctgcttgc
agtagtaagacagattatctgctaggattcaaagagaatgtgattatggggcacatgatc
cctggtggtacaggatttgatacgcataaacgtattaagcagcacctcgaaaaagagcaa
gaagacttggtctttgacttcgatagtgagtttgagtctgtagcaggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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