KEGG   Croceicoccus naphthovorans: AB433_00990
Entry
AB433_00990       CDS       T03964                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
cna  Croceicoccus naphthovorans
Pathway
cna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AB433_00990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cna03019]
    AB433_00990
   03016 Transfer RNA biogenesis [BR:cna03016]
    AB433_00990
Enzymes [BR:cna01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AB433_00990
Messenger RNA biogenesis [BR:cna03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AB433_00990
Transfer RNA biogenesis [BR:cna03016]
 Prokaryotic type
  tRNA degradation factors
   AB433_00990
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 S1_2
Other DBs
NCBI-ProteinID: AKM08877
UniProt: A0A0G3XCF4
Position
188505..190814
AA seq 769 aa
MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKKVKEGQDFFPLT
VHYQEKFSSAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVICQVMSY
DGETEADILAMIAASAALTISGVPFMGPIGAARVGYVDGEYTLNPKQDAALEDGRLDLVV
AATNHAVMMVESEAKELTEDEMLGAVMFAHEESKKVIGAIIELAEKAAKAPWEIDASDDT
SAIKEKLRGIVGDDIAAAYKLTDKSARSEALNAARAKAKEAFAGEEPQTQMVANKAVKKL
EAEIVRTAILKDGSRIDGRKLDQVRPIEATAGFLPRTHGSALFTRGETQAICTTTLGTKE
SEQMIDGLEGLTYSNFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKED
FPYTIRILSDITESNGSSSMATICGGCLSMMDAGVPIERPVSGIAMGLILEGDEFAVLSD
ILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFAAALKQAKDGRAHILGEMTKA
LSTARTELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISSS
DLSQIEAARKWIEGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGDRR
GPRRDGGGGRGRGGDRGDRGPRSGGRDRDDGEGKSGGNPDHMPAFLKDD
NT seq 2310 nt   +upstreamnt  +downstreamnt
atgttcgacaccaaaactgtatcgctggagtggggcggaaagaccctcaccctcgaaacc
ggccgcattgcccgtcaggctgacggcgcggtcctcgccacctatggcgaaaccgtggtt
ctttgcgccgtcacggccgcgaagaaggtgaaggaagggcaggacttcttcccgctcacc
gttcactaccaggaaaaattctcgtctgccggccgtatccccggtggcttcttcaagcgt
gaacgcggcgcgaccgaaaaggaaacgctgaccagccgcctgatcgaccgtccgatccgc
ccgctgttccctgaaggtttctacaacgaaatcaacgtcatctgccaggttatgtcctat
gacggcgagaccgaggccgacatccttgcgatgatcgccgcttcggctgcgctgaccatt
tcgggcgtgccgttcatgggcccgatcggcgctgcgcgcgtcggttatgtcgatggcgaa
tacacgttgaacccgaagcaggatgccgcgcttgaagacggtcgtctggatcttgtcgtc
gccgcaaccaaccacgcggtgatgatggtcgaatccgaagccaaggaactgaccgaagac
gaaatgctcggcgctgtcatgttcgcgcacgaggaatcgaagaaggtcatcggcgcgatc
atcgagctggccgaaaaggccgccaaggctccgtgggaaatcgatgcttcggacgacacc
tcggcgatcaaggaaaagctgcgcggcatcgtcggcgacgacatcgccgccgcttacaag
ctgaccgacaagtcggcccgttcggaagctctgaacgccgcccgcgccaaggccaaggaa
gcgtttgccggcgaagaaccgcaaacccagatggttgccaacaaggcggtcaagaagctg
gaagcggaaatcgttcgcaccgccatcctcaaggacggatcgcgcatcgacggtcgcaag
ctggatcaggttcgtccgatcgaggcgactgccggcttcctgccccgcacgcacggttcg
gcgctgttcacgcgcggtgagacgcaggcgatctgcaccaccacgctgggcaccaaggaa
tcggagcagatgatcgacgggctggaaggcctgacctactccaacttcatgctgcactat
aacttcccgccctactcggtcggcgaagtgggccgctttggcgccccgggccgccgcgaa
atcggccacggcaagctggcatggcgcgcgctgcacccggtgctgccgtcgaaggaagac
ttcccctacaccatccgcatcctgtcggacatcaccgagtcgaacggctcgtcctcgatg
gcgacgatttgcggcggctgtctgtcgatgatggacgcaggcgttccgatcgaacgtccg
gtgtcgggcatcgccatgggcctcatcctcgaaggcgatgaattcgccgtcctttcggac
attcttggcgacgaggatcacctcggcgacatggacttcaaggtcgctggcaccgaggcc
ggcatcaccacgatgcagatggacatcaaggtggccggcatcacgcaggaaatctttgct
gctgcactgaagcaggcgaaggacggccgcgcgcacatccttggcgaaatgaccaaggcg
ctgagcacggcccgcaccgaactatcggcccacgcgccgcgtatcgagacgatgcagatc
gacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgtgaaatcgtc
gcggaaaccggtgccaaggtggacatcgacgacgagggtgtgatcaagatctcgtccagc
gatctgtcgcagatcgaagccgccaggaagtggatcgaaggtatcgtcgaagaggcggaa
gtcggcaagatctacaccggcaaggtcgtcaacatcgtcgacttcggcgcattcgtgaac
ttcatgggcggcaaggacggtctagtccacgtgtcggaaatgaagaacgagcgcgttgaa
aagccgaccgacgtcgtttccgaaggccaggaagttaaggtcaaggtcctcgagatcgac
aaccgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgaagagctg
gaagacacgcgccccgctcgcgagccgcgtgaaccgcgcggtgatcgcggcgatcgtcgt
ggcccgcgccgcgacggcggtggcggccgtggacgtggtggcgatcgcggtgatcgcggc
ccgcgcagcggcggtcgtgaccgggacgacggcgaaggcaagtcgggcggtaaccccgac
cacatgcccgcgttcctgaaggacgactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (48)   

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