KEGG   Cryptococcus neoformans var. neoformans B-3501A: CNBC2050
Entry
CNBC2050          CDS       T01040                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cnb  Cryptococcus neoformans var. neoformans B-3501A
Pathway
cnb03018  RNA degradation
cnb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cnb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNBC2050
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CNBC2050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cnb03019]
    CNBC2050
   03041 Spliceosome [BR:cnb03041]
    CNBC2050
Messenger RNA biogenesis [BR:cnb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CNBC2050
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CNBC2050
Spliceosome [BR:cnb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CNBC2050
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 4934870
NCBI-ProteinID: XP_776714
Position
3:568715..569522
AA seq 147 aa
MLPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMF
IKGNIIKYFRIADNILEQAAEEQDKARAANRARGGARGGRGGPGGARGGRGGPPGRGGPP
GRGGGPARGGFNQRGRGGPPRGGPPRP
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttccactctcacttcttacagccgctcaaggcaagccaatgctggtggaactgaag
aatggagttaccttcaacggtcacctagtggaatgcgacactttcatgaacgttactctt
cgagaggtttaccaaacttcagcggacggcgagcgattctggaaaatgaaggagatgttt
atcaagggtaacattatcaagtatttccgtatagcagacaacattctggaacaagcggct
gaggaacaagacaaggcccgagcagcgaacagagcgcgaggcggagctagaggtggacgg
ggcggaccaggaggtgctcgaggtggtcgaggtggaccacctgggcgaggcggacccccc
ggtcgaggaggtggaccggcacgtggcggattcaatcaaaggggtagaggaggaccacct
aggggcggaccgcctcgaccataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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