KEGG   Cryptococcus neoformans var. neoformans JEC21: CNI00420
Entry
CNI00420          CDS       T00243                                 
Name
(RefSeq) DNA-directed RNA polymerase, putative
  KO
K03021  DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNI00420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNI00420
Enzymes [BR:cne01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CNI00420
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     CNI00420
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 3259518
NCBI-ProteinID: XP_572718
UniProt: Q5KC33
Position
9:join(102716..103012,103061..103602,103825..106020,106070..106295,106349..106657,106712..106762)
AA seq 1206 aa
MPPKAPVKRTAASSSTTAPRKAPRAGPSTTTATAKRPATTSSTVAKGKAPARPSASTQVD
VKPKIEDTRGEEEWADLMKQQYGDKKGADWYSKGVKTVEDKWQLLPAFLKVKGLVKQHLD
SFNYFVNVDIKAILAANSLVISDINPKYYIRYTDIRVGRPARHDANQVASALSPMECRLT
DSTYSAPIYVDVEYMGEEKRSKQRGVQIGMLPVMLRSDLCNLKGKNEAELARMGECPMDP
GGYFVVKGTEKVILVQEQLSKNRILVMKDKKDEVMAEVTSSTHDRVVKTYVVSKANRLYL
RHNSFKEFIPIVIALKAMGLTADKEILQLICGSDERYQEAFGVSLEEAAKEKTFTRRQAL
EWIGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRNMNFRPKCIYLATMARR
VLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGP
FDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISS
QFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVPETPLVKMAFM
LGVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKRFVRQFRKLRRAGRMSEFVSIFIN
HHHKIIYIASDGGRICRPMIIVEKGRSRVTTEHVRLLKEGKVTFDHFLRAGLVEYLDVNE
ENDSFIACYENEIEEGTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAI
AYNQLNRIDTLLYLMTYPQQPMVKTKTIELIGYNKLPAGQNATVAVMSYSGYDIEDALIL
NRASVDRGFGRCHVLKKVTTPMRTFHNGSHERTAYPDPPPRPDAYTFVDKADGMTAPGAT
INQYDVMIHRETPVDTRGGGADTQLYKPMPVTHKTPEPILVDKVMLTEGEDGALIKILTR
QTRRPELGDKFSSRHGQKGVCGLIVPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKMIEL
LSGKAGVVAGKLQYGTAFGGSKVVDMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGP
IYYQKLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLE
RLMISSDAFETQVCESCGMLGYNNWCPKCKSGKGVVGLTIPYAAKLLIQELMGMNIMPKL
CLEDTV
NT seq 3621 nt   +upstreamnt  +downstreamnt
atgcctcctaaagcccctgtcaagcgcacggcggcttcatcctccactactgctcctcga
aaagctcctcgcgctggcccatctacgacaacagcaaccgcaaagcggcccgccacaact
tcctcaacagtagctaagggcaaagcgccagctcgaccgtcggcatctacacaggtcgat
gttaagcccaaaattgaagatactaggggagaggaggaatgggcagatttaatgaagcag
cagtatggcgataagaagggcgctgattggtattccaagggtgtgaagactgtcgaagat
aaatggcaacttctcccagcttttctcaaagtaaaaggccttgtcaagcagcatcttgac
tcctttaactattttgtcaatgtcgacatcaaagctattcttgcggccaactctcttgtc
atttcagatatcaaccccaagtactacatccgatataccgacatccgtgtagggcgtcca
gcacgacatgatgctaatcaagtggcctctgctctttcgccgatggagtgtcgattgaca
gattccacatatagcgcgccgatctatgtggatgtggaatacatgggagaagaaaagagg
agcaagcagaggggtgtgcagattggcatgttgccagtaatgttgaggagcgatttgtgt
aacctcaaagggaagaatgaggcggagctagcgaggatgggagagtgcccgatggatccg
ggaggatatttcgttgttaagggaacggaaaaggtcatattggtgcaagagcagttgagc
aagaatcgtatcttggtaatgaaggataagaaggatgaggtgatggctgaagttacatct
tcaacgcacgaccgagttgtcaaaacctatgtcgtcagtaaagccaaccgtctctatctc
cggcacaactctttcaaggaattcatccctatcgttatcgccctcaaggctatgggtctc
actgcagacaaggaaatcctccaactcatatgcggttccgacgaacgataccaggaggcc
tttggtgtttccctcgaagaagctgccaaggagaagacctttacgcgccgtcaagcgctc
gaatggattggcgccagagtatctcccaaccaggctaaggatgacagcgggtccaaccag
aagcttaccccaagcgatattgcccagcaggctcttgctgcaatggttcttggtcatgtt
cctgtgcgaaacatgaacttccgacccaagtgcatctatcttgccaccatggcgcgaagg
gttctcatggccatgattgacgatcatatggttgatgatcgagattacgttggtaacaag
cgtctagaacttgccggtcagcttttgtctttgctctttgaagattctttcaagactttt
aacagcgagctcaaaaagcgaatggacaaaattctggaaaagcccaaccgtgccggtcct
ttcgatgccgggactctgattcgtcaaggtggtgatcccatcactcaggcgtttgtccgt
tccatctccaccggcaactggtcgcttaagcgattccacgtcgagcgggcaggtgttacc
catgtcttgtctcgtttatccttcattgccgcattgggtatgatgactcgtatctcttct
caattcgaaaagacgcgtaaggtctctggtcctcgtgctcttcaaccgagtcagtggggt
atgctctgtccttccgatacgcctgaaggtgaagcatgtggtcttgtgaagaacttggct
cttatgacccacattactacggacgtacctgaaacgcccttggtcaagatggcgttcatg
cttggtgttgaggatatttcccttgttaccggtaatgaactctaccggcccggagtgcat
atggtgcaggtgaatggtacgctcatcggtgtgaccaacatggcgaaacgatttgtgaga
cagtttagaaagttgaggcgagctggaaggatgtctgagtttgtgtcaatctttattaac
catcaccacaagatcatctacattgcaagtgatggtggacgaatttgtcgaccgatgatt
attgttgaaaagggaagatcacgagtgacaacggagcatgtgaggcttttgaaagagggc
aaagtcactttcgatcatttcctccgagcaggcttggtggaatacctagatgtcaacgag
gagaatgactctttcatcgcgtgttacgaaaatgagatcgaagaaggaacaacgcatctc
gaaatcgaaccatttactattctcggtgctgtcgccggtttgattccttaccctcaccat
aaccaatctcctcgaaacacctatcaatgtgcgatgggtaaacaagctattggcgccatc
gcatacaatcagcttaaccgaattgataccttgctgtatctcatgacataccctcaacag
cccatggtcaagaccaaaacgatcgagctgatcggctacaacaaacttcccgccgggcag
aatgctacagtcgctgtcatgtcttactctggatacgatatcgaagatgctttgattctc
aatcgtgccagtgtagaccgaggttttggtcgatgtcatgttctcaagaaggtgacaacg
ccaatgcgaacgttccataacggttcacatgaacgtactgcttatcctgatcctcctcct
cgacccgacgcatatacttttgttgataaggccgatggcatgaccgctcccggtgctact
atcaaccaatacgacgtgatgatccatcgagaaacccctgtcgatactcgtggtggtggt
gcggacacccagctgtacaaaccaatgcctgtcacccacaagacacctgaaccgattttg
gttgataaggtgatgctaacagagggcgaggatggtgcgttgatcaaaatcttgacgagg
cagactcgaaggccagaactgggtgacaagttctcttcgcgacacggtcagaagggtgtt
tgtggtttgatcgtgccccaggcagatatgccattcaatgatcaaggtattgtacctgat
atcatcatgaatcctcatggtttcccctctcgaatgactgtcggaaaaatgatcgagctc
ctttctggtaaagccggtgtcgtcgctggtaaactccaatatggcactgcatttggtggt
tccaaggtcgtcgacatgtcgcagatccttatcgacaacggtttttcgtatgggggtaag
gatatgttaaccagtggtatcaccggtcagccgatggaagcctacgtctactttggacct
atttattatcagaaacttaagcatatggtcatggacaaaatgcatgctcgacctactggt
ccacgagctaatcttactcgccagcctactgaaggtcgttcgaaggacggtggtctccgt
ctaggtgaaatggagcgtgattgtttaattggttatggtgccactcagcttttgttggaa
cgtcttatgatctcctccgatgcgttcgagactcaagtatgtgagagctgtggtatgttg
ggatacaataactggtgtcccaaatgtaagagtggtaagggggttgtagggttgaccatt
ccgtatgcggccaagttgttgatacaggagctgatgggtatgaacattatgcccaagctt
tgcttggaagacactgtctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (42)   

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