KEGG   Cryptococcus neoformans var. neoformans JEC21: CNL05040
Entry
CNL05040          CDS       T00243                                 
Name
(RefSeq) beta DNA polymerase, putative
  KO
K03513  DNA polymerase mu [EC:2.7.7.7]
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CNL05040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNL05040
Enzymes [BR:cne01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CNL05040
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    X-family DNA polymerases
     CNL05040
SSDB
Motif
Pfam: DNA_pol_B_thumb DNA_pol_B_palm HHH_8 DNA_pol_lambd_f
Other DBs
NCBI-GeneID: 3254725
NCBI-ProteinID: XP_024513846
Position
12:join(414057..414464,414518..414859,414913..415005,415064..415073,415127..415200,415264..415565,415621..415713,415769..415902,415961..416162,416236..416253,416316..416451)
AA seq 603 aa
MGVSFVSLFCLVSHYLSWLIDRYSTIVIISRVCTTFRFGLLTTLMPSRPPVHPYTSSSTS
TGVHGHHNAAPHQLYKLFANLTFHIVPAKLEDDLARIYECIDELGGKCVGPEDAWVIVTA
LKGRQRLSRSLDQKWMETKQIVYVSYIFDTYQACLEHAVSPKTSTPKLPLRKNYLHVLSK
EQSPIKISCRLDPGDPSISQPSTKRRKVNDGYVTAYRDDMTLLKEDVPLEGIPASCAQRP
CPLVCINQDIVDAIKPIFEEREFEEAQQKNSNVLSYRRSLSMLKSVPRRITSGKEALSLQ
GVGEKVATRIDEFLQTGEIAESQEILASSRFNALQNFASVYTIGHFRAKELYERHHCRTL
DDVKRHFADMEKDGEAKQGRGKDKRRMRGGMKEHEIVEEWMKLKNELDQKIPRKEVEEIA
ACVLDNLEAFIPGCEYTICGGYRRGKAQSSDVDIVFRPPKDDQDIGLLRALYLRLSELGI
VTHVLQVTHRDSNQPIRAAAQNFDNLDKAFVIFKLPGEGRLHRRVDLISAPRDRYASAVL
SWTGSMMFERDLKRYAENEKGHKFRAGLIKIATGEEINLETEREIFDYLGLRYIPPELRN
ADG
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgggcgtctctttcgtttcgctgttttgtcttgtttcgcattacttgtcgtggctgata
gatagatattcgaccattgttataatatcccgtgtctgtaccactttccgctttggtttg
ctcaccaccttaatgccctcccggcctcctgtccatccctacacttccagttcgacttca
actggggtgcatggccatcacaacgccgccccacatcaactgtataagctctttgcaaat
ttgacctttcatattgtaccggccaagcttgaagatgaccttgcccgaatttatgaatgt
atcgatgagttggggggaaaatgtgtggggccggaggatgcctgggttatagtcactgct
ttaaaagggaggcaaagactgtcgaggtctctggaccaaaaatggatggagaccaagcaa
attgtctacgtcagctatatcttcgacacctaccaggcatgcttggaacacgctgtttct
ccaaaaacgtcgactcccaaactccctctacgaaaaaattatctacacgtcctttcgaaa
gaacagtctcctattaagatttcctgtagactggaccctggggacccaagtatctcacag
ccttctaccaaaagaaggaaagtaaacgacggttatgtgacagcttatagggacgatatg
actctcttgaaagaggatgtgcctctcgaaggcatcccggcctcttgcgctcaaagacca
tgtcctctggtatgcatcaatcaagatatcgtggacgctatcaagccaatctttgaagag
cgagagtttgaagaggcacagcagaaaaactcgaatgttttgagctaccgccgaagtcta
agtatgctcaaatctgtgccgagacgaatcacatcaggcaaggaagcgctgagtcttcaa
ggtgtgggtgagaaggtggctaccagaatcgacgagttcttgcagacaggtgaaatagcc
gaatcgcaagagattttggcatcatctcggttcaatgcgctccagaattttgcctccgtg
tatactatcggtcattttcgggccaaagaactatatgagcgacatcactgccggacgctg
gacgacgttaaacggcattttgctgatatggagaaagatggagaagccaagcaggggaga
gggaaagacaaaagaaggatgcgaggtggtatgaaggaacatgagatagtagaggagtgg
atgaagttgaaaaatgagctagatcagaaaattccaaggaaagaggttgaggaaattgct
gcgtgcgtgctggacaatcttgaggcattcatacccggttgtgaatataccatctgtgga
ggttatcgacggggcaaggcccagtcaagcgatgttgatattgtatttcgcccaccgaaa
gatgatcaggacatagggctcctacgagcactctaccttcgtctttcagagcttggtatc
gtcactcatgtccttcaggttacgcatcgtgattccaaccagccaattcgtgccgctgca
caaaactttgacaatctagacaaggctttcgtcattttcaaactgcctggtgaaggaaga
ctgcatagaagagtggatttgatcagtgccccgagagatcggtatgctagtgctgtattg
agctggacagggagtatgatgtttgaaagggatcttaaaagatatgccgagaatgaaaag
ggtcacaaattccgagcaggtctcattaagattgccacaggggaagagattaatttggaa
acagaaagagaaatttttgattatcttggtctgagatatatccctcctgagctgaggaac
gccgacggataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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