KEGG   Caldicellulosiruptor obsidiansis: COB47_1978
Entry
COB47_1978        CDS       T01293                                 
Name
(GenBank) tRNA pseudouridine synthase D TruD
  KO
K06176  tRNA pseudouridine13 synthase [EC:5.4.99.27]
Organism
cob  Caldicellulosiruptor obsidiansis
Brite
KEGG Orthology (KO) [BR:cob00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cob03016]
    COB47_1978
Enzymes [BR:cob01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.27  tRNA pseudouridine13 synthase
     COB47_1978
Transfer RNA biogenesis [BR:cob03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    COB47_1978
 Prokaryotic type
    COB47_1978
SSDB
Motif
Pfam: TruD OMP_b-brl_2
Other DBs
NCBI-ProteinID: ADL43243
UniProt: D9TGC3
Position
complement(2130023..2131192)
AA seq 389 aa
MKIKVVPEDFVVREKINLEIKPSGRYKIYLLTKRHWNTVDALRFISKENRIPIEKIGCAG
RKDRHAFTFQYISVPREYTINFDRENVKVQFIGYSDDFVSPLILEGNFFEITIRKLKNKD
EKILRRLNEVQQFGFPNYFDDQRFGSTQSEDEFIGEKIIKKHYNGALKLYFTTIHPEDKK
EEKERKKKIAELWGDFEKILPLCKTKVERDIIKTLLKGKSKHYLIEALNLIPKEEMSIFL
SAYQSYIWNRTLIAVLPYYADLLKPVKGKIIDYLIYTTLSTKSLNSLKNLQIPTVSSKIP
YVNDIVNNAILEILNERGVKPSDFDTKKIKSWYFKSFLRPAIVFPENLEISDFEEDDFYN
GYYKLRIKFYLPAGSFATMLIKSLTITNT
NT seq 1170 nt   +upstreamnt  +downstreamnt
ttgaagattaaggttgtaccagaggattttgttgtgagagaaaaaatcaatcttgagata
aaaccgtcgggcagatacaaaatttatcttttaacaaaaagacactggaacactgttgat
gctctcagattcatttcaaaggagaacaggattcctatagaaaagattggatgtgcaggc
agaaaagacagacacgcatttacttttcagtatatttctgtaccaagagaatataccata
aattttgacagagaaaatgtaaaggttcagttcatagggtattcagatgattttgtatcc
cctttgattctcgaagggaatttttttgaaataacaataagaaaattaaaaaataaggat
gaaaaaattttacgaagactgaatgaagtacagcagtttggttttcccaactactttgac
gaccagcggtttggaagcacccaaagtgaagatgagttcataggagaaaagattattaaa
aaacattacaacggtgctctcaaactttactttactaccattcatcctgaagataaaaaa
gaagaaaaagagagaaaaaagaaaatagctgaactctggggagattttgaaaagatacta
cctctttgtaaaacaaaggtagaaagagatattataaagactcttctaaaaggcaagagc
aaacactatttaatcgaagcactcaatcttattcccaaagaagagatgtctatttttctt
tctgcttaccagagctatatttggaacaggacattgattgcagttttgccctattatgct
gatttgttaaaacctgtaaaaggaaaaattatagactacttgatttacactacactttca
acaaagtctttaaatagcttaaaaaaccttcagattccaactgtttcatcaaaaatacca
tatgtaaatgatattgtaaataacgctattttagagattttaaatgaaagaggagtaaag
ccttctgactttgatacaaagaaaattaaaagttggtattttaaatcatttttaagacct
gctatagtctttccagaaaatcttgaaatttctgattttgaagaagatgatttttataat
gggtattataagcttaggataaaattctatcttcctgccggttcttttgctacgatgctt
ataaaaagtttaacgattacaaacacataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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