KEGG   Colwellia sp. PAMC 21821: A3Q33_13335
Entry
A3Q33_13335       CDS       T04816                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
colw  Colwellia sp. PAMC 21821
Pathway
colw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:colw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    A3Q33_13335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:colw03400]
    A3Q33_13335
Enzymes [BR:colw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A3Q33_13335
DNA repair and recombination proteins [BR:colw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      A3Q33_13335
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: ARD45200
Position
complement(3144040..3147549)
AA seq 1169 aa
MSKNVSLFSPVLAKSRGKSADKKVWQNLPGSSATVAIFHGALSTQQPILLLTHDTPSALR
LEQELASLNRQAKLPICLFPDWETLPYDTFSPHQDIISQRLATLYQLSRMDKGIVIVPIS
TLIQRLAPKQYIEANSLIIQKGDKKDLHQLRQNLEASGYRCVDQVMEHGEFSARGAILDI
FPMGSNTPFRLDFFDDEIDEIRLFDPENQRSSDKVDGINLLPAHEFPTDTDGTNLFRSQY
REQFTSTIDKESIYHQVSNGIMPAGIEYYLPLFFEQTNTLCDYLADNTLVIISGDIDKAL
THYWTDIDYRYEDRRYDPTRPLLPPSHLFLNSEELYSALKPFDRINLKPDVNEDEVKASQ
VQFDVHALPDLTIDHKLKQPFELLNNFVTSKETPNKLLFVAESQGRRESVLELLERNKIK
PNVFNTIEDFVNSDAPLGITVNALSAGFIFQAKGSAKKNAIALITEAELLGDRVRQTRRR
NKQQEIQNDAIFKNLAELSIGQPVVHIDHGIGRYMGLQTIENSGITTEFLVLSYAKEAKL
YVPVASLHLISRYSGADAEHAPLHKLGNDTWSKAKQKAAEKVRDVAAELLDIYAKRASNH
GYSFKRDKDEYRAFADSFGFEETFDQEQAINAVISDMLSPKAMDRLVCGDVGFGKTEVAM
RAAFVAVNDGKQVAILVPTTLLAQQHYESFRDRFANWPVTIEVLSRFKTTKEQNAVIKEV
ESGQIDILIGTHKLLQNSIKYKDLGLLVVDEEHRFGVKQKEKIKQLRANVDILTLTATPI
PRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRERDDALIRESILREVLRGGQVYFLHNNV
DTIDKTAADIQLLLPEAKIITAHGQMRERELERVMGDFYHQRYNVLVCTTIIETGIDVPT
ANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDAKKRLEAIASLEDL
GAGFTLATHDLEIRGAGELLGEDQSGSMSQVGFTLYMEMLDAAVAALKDGKELSLDQVTK
TQTEVDLRVAALLPDDYIFDVSLRLSLYKRIASCKNKQALDDVQVELIDRFGLLPQAAKN
LIHIAKLKLKAEKIGITRIDAGPAGGSFEFSVDTKVDHMFIFGLIQQQPKIYKMDGANKL
KFKQATEDAKSRFILITTMLNELAKHLRP
NT seq 3510 nt   +upstreamnt  +downstreamnt
atgagtaaaaatgttagtcttttcagtccagtattagctaaaagtcgcggtaaaagtgcc
gataaaaaagtttggcaaaatctacctggcagtagcgcaacggtcgctattttccatggc
gcgttatccacacaacagcccatactactgctgactcatgacacgccatcagcgttgcgt
ttagagcaagaacttgccagtttaaatcgacaagcaaaattaccgatttgcttatttcct
gattgggaaaccttaccgtacgatacattttcgccacaccaagatattatttctcagcga
ttagccactttatatcaattatcgcgcatggataaaggcattgttatagtgcctatttcc
accttaatacaacgtttagcacccaagcaatatattgaagctaatagcttaatcatccaa
aaaggcgataaaaaagatttacatcagctaagacaaaacttagaagctagcggttatcgt
tgtgttgatcaagtgatggagcacggtgagttttctgcccgcggtgccatacttgatata
tttcctatgggcagcaacaccccgttcagattagacttttttgatgacgaaattgacgaa
attcgtttgtttgacccagagaaccaacgttcgagtgataaagttgatggcattaattta
ttacccgcgcatgaatttccaaccgatactgacggtaccaatttatttcgtagccaatac
cgcgaacaatttaccagcacgatagataaagaatctatttatcaccaagtcagtaacggc
attatgccggcaggcatcgagtattatttaccgttattttttgagcaaaccaatacctta
tgtgactatctagctgataacactttggtgattatcagtggcgatattgataaagcttta
acacattactggaccgatattgactaccgctatgaagatagacgctacgaccctactcga
ccattattaccgcctagccacctatttctaaatagtgaagaactttacagcgcattaaaa
ccttttgaccgtatcaatttaaaacctgacgttaatgaagatgaagtaaaagcatcacaa
gtgcagtttgacgtgcatgcactgcctgatctgaccatagatcataaattaaagcagcct
tttgaattacttaataactttgttactagcaaagaaacgccaaataagctgttatttgtg
gcagaaagccaaggtcgacgtgaaagtgtattagagttattagagcgcaataaaataaag
cctaatgtctttaatactattgaagattttgttaacagtgacgcgccgctcggtatcacg
gttaacgctttaagtgccggttttatttttcaagccaaaggcagtgctaaaaagaatgcc
atagcgttaattacagaagcagaattactcggcgatcgggtacgccaaactcgtcgtcgc
aataaacaacaagaaattcaaaacgacgcaatctttaaaaacttagcagagctaagtatc
ggccaaccggttgttcatattgaccatggcattggtcgttatatgggtttacagacgata
gaaaacagcggtattactactgaatttttagtactcagttacgctaaagaagccaaacta
tatgtgcccgttgcctctctgcatttaattagtcgctactcaggcgcagacgctgaacac
gctcctttacataagttgggtaacgacacctggagtaaagccaaacaaaaagcggcagaa
aaagtacgcgacgtcgctgctgaactgttagatatttatgccaaacgtgctagtaaccat
ggttatagctttaaacgtgataaagatgaatatcgtgcctttgctgatagttttggtttt
gaagaaacctttgatcaagagcaagctattaatgcggtgatcagcgatatgctttcacca
aaagcgatggaccgattagtttgtggtgacgttggctttggtaaaaccgaagtcgcaatg
cgagcagcctttgtcgcggtaaatgacggtaagcaagtagcgatattagtaccaacgacc
ttactcgctcaacaacattacgaaagtttccgtgatcgtttcgccaactggcccgttacc
attgaagtgctatcacgctttaaaaccaccaaagagcaaaatgccgttattaaagaagtg
gagtctggccaaatagacattttaattggcactcataaacttttacaaaacagcattaaa
tataaagatttaggacttttagtcgttgatgaagaacatagatttggtgttaaacaaaaa
gaaaaaataaaacagttacgtgccaatgtcgatattttaaccctaaccgcaaccccgatc
cctcgcaccttaaatatggcgatgggtggcatgcgtgacttatcaataatagcgacgcca
ccagcaaaacgcttagcggtaaaaacttttgttagagagcgtgatgacgctttaatccgt
gaatcaattttgcgtgaagtgttacgtggtggccaagtttatttcttacacaataatgtc
gacaccatagacaaaactgccgcagatatacaactattattgccggaagcgaaaattatt
actgcccatggtcaaatgcgagagcgtgaacttgagcgtgtaatgggcgacttttatcac
caacgttataacgtgttagtttgtactaccattattgaaaccggcattgatgtacctacc
gctaacaccattattatggaccgagcagaccatttaggtttagcgcaattgcatcaatta
cgtggccgtgtgggtcgttcgcatcaccaagcttatgcttatttattaacaccgcacgaa
aaacgcatgaccaaagatgcgaaaaagcgtcttgaagccatcgcatcccttgaagattta
ggcgccggctttaccttagccactcacgatttagagattcgtggcgcaggtgaattatta
ggcgaagatcaaagtggttcaatgagccaggtcggctttacgctttatatggaaatgctt
gatgccgcggttgctgcgcttaaagacggtaaagagttgtcgcttgaccaagtcaccaaa
acgcaaacggaagtagacttgcgcgtagcagcactgctgccagatgactatatttttgat
gtcagtttacgtttaagcctttataaacgtattgccagttgtaaaaataagcaagcactt
gacgatgtgcaagttgagctgattgatcgttttggcttgttaccccaagcggcaaagaat
ttaattcatattgctaagctaaagcttaaagcagagaaaataggcattactcgcattgat
gctggacctgctggtggttcatttgagttcagtgtcgatactaaagtagaccatatgttt
atctttgggttaattcagcagcaaccaaaaatatacaaaatggacggagcgaataagctc
aaatttaaacaagcaaccgaagatgctaagtctcgatttattttgatcaccaccatgcta
aacgaattggcgaaacatttgcgcccgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system