KEGG   Actibacterium sp. EMB200-NS6: TQ29_16835
Entry
TQ29_16835        CDS       T04096                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
con  Actibacterium sp. EMB200-NS6
Pathway
con03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:con00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TQ29_16835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:con03019]
    TQ29_16835
   03016 Transfer RNA biogenesis [BR:con03016]
    TQ29_16835
Enzymes [BR:con01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     TQ29_16835
Messenger RNA biogenesis [BR:con03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TQ29_16835
Transfer RNA biogenesis [BR:con03016]
 Prokaryotic type
  tRNA degradation factors
   TQ29_16835
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 S1_2
Other DBs
NCBI-ProteinID: ALG91551
Position
3457622..3459754
AA seq 710 aa
MFNVTTKSMQWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT
VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGFVDGEYILNPDVDDMQDLRNNPEQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHQQIQPVIDLIISLAEASAKEPFDFQ
SPDYSALYDAVKAAGEAAMHAAFAITDKQERTATVAAARETVKAALTEEQLEDPNLGSAF
KKLESSVLRGDVVTNGKRIDGRALDTVRPIVCETGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGRYA
ILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKAGRLHILGE
MAKALTEAGEFSAHAPRIETMTVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKI
ASANADAIQKAYDMIYSIVAEPEEGKIYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVYVKLLGFDDRGKVRLSMKMIDQSTGEEMAEEKAEG
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgtttaacgttacgacgaaatcgatgcagtggggcgacgagaccctcacacttgaaacg
ggcaaggttgcccgccaggccgatggctctgtcatcgccaccctcggcgaaacctcggtc
atggccaacgtgaccttcgccaaggaacccaaaccggggcaggatttcttcccgctgacg
gttcactatcaggaaaaatactatgccgccggtaaaatcccgggcggtttcttcaagcgc
gaggcgcgcccgaccgaaaaggaaacgctgaccgcgcgcctgatcgaccgtccgatccgc
ccgctgttcgtgcccggcttcaagaacgaagtgctggtgatgtgcaccgtgctgagccac
gatctggtcaatgaccccgatatcgttgcgatgatcgccgcctcggccgcgctgaccatt
tccggcgcgcccttcatgggcccgatcgccggttgccgcgttggtttcgtggatggggaa
tacatcctgaaccccgacgtcgacgatatgcaggatctgcggaacaaccccgagcagcgg
ctcgatctggttgttgccggcaccaaagacgcggtgatgatggtggaatcggaagcctat
gagctttccgaggccgaaatgctgggcgccgtaaacttcgcgcatcagcagatccagccg
gtgatcgacctgatcatcagcctggccgaagcctcggcgaaagagccgttcgatttccag
tcgccggattactcggcgctgtatgacgcggtgaaagccgccggcgaggccgcaatgcac
gccgccttcgcgatcaccgacaagcaggagcggaccgccaccgttgccgccgcgcgcgag
acggtcaaggccgccctgaccgaggagcagcttgaagatccgaacctcgggtccgccttc
aagaagctggagagctcggttctgcggggcgatgtggtgaccaacggcaagcggatcgac
ggccgcgcgctggataccgtgcgcccgatcgtctgcgaaaccggcctgctgccgcgcacc
catggctctgccctgttcacccgcggcgaaacgcaaggtttggtcgtgaccacgctgggc
acgggcgacgatgaacagttcatcgacgcgctgcacggcaacttcaaatccaacttcctg
ctgcactacaacttccccccctactcggtgggcgaagttggccgcgtgggctcgcccggc
cgccgcgaaatcggccatggcaaactggcatggcgcgcccttcaggccgttctgcccgcc
gcgaccgatttcccctacacgatccgcatcgtgtcggagatcaccgaatccaacggctcc
agctcgatggcgtctgtctgcggcggttcgctgtcgatgatggatgcgggcgttccgctg
aaggcgccggttgccggtgtggccatgggcctgatcctggaagatgacggccgctatgcc
atcctgacagacatcctgggcgacgaggatcacctcggcgacatggacttcaaggtggcc
ggtactgaaaacggcatcacctcgctgcagatggacatcaaggtcgcgggcatcacgccc
gagatcatggaaaaagccctggcccaggccaaggcaggccgcctgcacattctgggtgaa
atggccaaggcgctgaccgaagccggcgaattctcggcccatgcgccgcggatcgaaacc
atgaccgtgcccaccgacaagatccgtgaagtgatcggctcgggcggcaaggtcatccgc
gagatcgtggaagtgtcgggcgccaaggtcgatatcaacgacgacggcgtgatcaagatc
gcctcggccaatgccgacgccatccagaaggcctatgacatgatctattcgatcgtggcc
gagccggaagagggcaagatctacaagggcaaggtcgtgaagatcgtcgatttcggcgcc
ttcgtgaacttcttcggcaagcgtgacggccttgtgcatgtcagccagatcgaaaaccgc
cgcctgaaccacccctcggacgttctgaaggaaggccaggaggtttacgtcaagcttctg
ggctttgacgatcgcggcaaggtgcgcctgtcgatgaagatgatcgaccagagcaccggc
gaagagatggcggaagaaaaagcagaaggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (50)   

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