KEGG   Colwellia sp. PAMC 20917: A3Q34_10675
Entry
A3Q34_10675       CDS       T04511                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
coz  Colwellia sp. PAMC 20917
Pathway
coz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:coz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3Q34_10675 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:coz03021]
    A3Q34_10675 (rho)
   03019 Messenger RNA biogenesis [BR:coz03019]
    A3Q34_10675 (rho)
Transcription machinery [BR:coz03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     A3Q34_10675 (rho)
Messenger RNA biogenesis [BR:coz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     A3Q34_10675 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 Mor Spore_III_AA AAA DUF5662
Other DBs
NCBI-ProteinID: AOW77278
UniProt: A0A1D8RW02
Position
2476966..2478225
AA seq 419 aa
MNLIELKEKPISELVELAASMKLDNLGRNRKQDIIFAILNAHAENDNDIFGGGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFSMRTGDTIHGKIRPPKKGERYFALLKVAEVN
FDKPENVRNKILFENLTPIHPDERLIMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAHNHPDAELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPANRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKILTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELHLSRKVSEKRVFPAINI
NRSGTRREELITKPAELQKMWILRKIVHEMDEVGAIEFLIDKLAMTKTNNEFFDSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaacctgatcgaacttaaagaaaaaccaataagcgaacttgtcgagcttgccgcatct
atgaagcttgataatttaggccgcaatcgtaaacaagacataatttttgctatattaaat
gcccatgccgaaaacgataatgatatttttggtggcggtgttctagaaattttacaagac
ggctttggttttttgcgttcttcagactcctcatatttagcaggacctgatgatatttat
gtttcaccgagtcaaattcgccgtttcagtatgcgtacgggtgatactattcacggaaaa
attcgtccacctaaaaaaggtgaacgctatttcgcgttattaaaagtagcagaagttaat
ttcgacaagccagaaaatgttcgcaacaaaatactctttgaaaatttaaccccaattcat
cctgatgaacgtttaatcatggaacgtggtaatggttcaactgaagatattaccgcacgt
gttttagatttagcttctccaattggtaaagggcaacgtggtttaattgttgctccacca
aaagcgggtaaaacattattactacaaaacattgcgcaaagtattgctcataaccatcct
gatgccgagttaatggtattgcttatcgatgaacgtccggaagaagtgacagagatgcag
cgcttggtaaaaggcgaagtcattgcatcaacgttcgatgagccagcaaaccgccatgta
caagtagctgaaatggttattgaaaaggctaagcgtttagttgaacataaaaaagatgtt
gttattctacttgactcaattacacgtttagctcgagcttataacacggttattccatca
tcaggtaaaattcttaccggtggtgttgacgccaatgctttacaccgtccaaaacgcttt
tttggtgccgcgcgtaatattgagcacggtggtagtttaacgattatcgcgacagctcta
gtagaaaccggctctaaaatggacgaagttatttacgaagagtttaaaggtaccggtaac
atggaattacacctttctcgtaaagtgtctgaaaagcgcgttttcccagcgattaatatt
aatcgtagtggtactcgtcgtgaagaattgatcactaaacctgcagaattacagaaaatg
tggattttacgtaaaattgttcatgaaatggacgaagttggtgcaattgaattcctcatc
gacaaactagcaatgactaaaacgaataacgaattttttgattctatgaaacgtaaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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