KEGG   Chlamydia pneumoniae AR39: CP_0624
Entry
CP_0624           CDS       T00029                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cpa  Chlamydia pneumoniae AR39
Pathway
cpa03030  DNA replication
cpa03410  Base excision repair
cpa03420  Nucleotide excision repair
cpa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CP_0624
   03410 Base excision repair
    CP_0624
   03420 Nucleotide excision repair
    CP_0624
   03430 Mismatch repair
    CP_0624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpa03032]
    CP_0624
   03400 DNA repair and recombination proteins [BR:cpa03400]
    CP_0624
Enzymes [BR:cpa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CP_0624
DNA replication proteins [BR:cpa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CP_0624
DNA repair and recombination proteins [BR:cpa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CP_0624
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CP_0624
   MMR (mismatch excision repair)
    DNA ligase
     CP_0624
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CP_0624
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT HHH DNA_ligase_ZBD HHH_3 PTCB-BRCT RNA_pol_A_CTD HHH_8 DUF2157 BRCT_2
Other DBs
NCBI-ProteinID: AAF38439
UniProt: Q9Z934
Position
complement(653498..655486)
AA seq 662 aa
MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSP
STRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSPRYTVELKIDGIA
VAIRYEDRVLVQALSRGNGKQGEDITSNIRTIRSLPLRLPEDAPEFIEVRGEVFFSYSTF
QIINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDNDSHYENLQ
RCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLASQRVLGATG
KHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSRASLYNEDEI
HRKDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNMPEFCPVCHSHVVREEDRVSV
RCVNPECVAGAIEKIRFFVGRGALNIDHLGVKVITKLFELGLVHTCADLFQLTTEDLMQI
PGIRERSARNILESIEQAKHVDLDRFLVALGIPLIGIGVATVLAGHFETLDRVISATFEE
LLSLEGIGEKVAHAIAEYFSDSTHLNEIKKMQDLGVCISPYHKSGSTCFGKAFVITGTLE
GMSRLDAETAIRNCGGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQEAFTNLIH
LE
NT seq 1989 nt   +upstreamnt  +downstreamnt
atgaaggaagagaattcacaagcacactacttagctttatgtcgtgaattagaagaccat
gattattcttattatgtgttgcatcgtcctagaatctctgattatgaatatgacatgaaa
ttacggaagcttcttgaaatagagagaagtcatcccgaatggaaagtcttatggtctccc
tcaacacgtctcggagatcgtccctctggaactttttctgtggtttcccataaggaaccg
atgctttccattgccaatagctattctaaagaagaactaagtgagtttttttctagggta
gaaaaatccctaggtacaagtccacgttatacagtagaacttaaaatcgatgggattgca
gtagcaatacgttatgaagatcgtgtgttggttcaagcactcagccgaggaaatggaaag
cagggagaggatatcacatcgaatattcgaacaatacgctccttgcctttaagacttcca
gaagatgctccagagtttattgaagtacgtggcgaggtcttcttctcttattctacgttt
caaattatcaatgagaagcagcaacaattagagaaaactatttttgccaacccgagaaat
gctgcaggaggtaccttaaagttactttctcctcaagaagtcgcaaaacgtaaattagaa
atttctatctataatctcattgctccaggagataacgattctcattatgaaaatcttcag
cgctgccttgaatggggatttcctgtatctggtaaaccaagattgtgctctaccccagag
gaagtgatctcagttttaaagactatagaaactgagagagcttccttgcctatggaaatc
gatggtgctgtcatcaaggtagacagtttggcaagtcagagagttcttggagccacaggg
aaacactatagatgggccttagcttataaatatgccccagaggaagcagagacccttctt
gaggatattctagttcaagtaggaagaacgggagttctgactcctgtagctaaactcact
cctgtactgttgtcagggtctttagtatctagagcgtctctatacaatgaagatgagatt
catagaaaagacatccgtattggtgataccgtttgtgttgctaaaggtggagaggtgatt
ccaaaagtagttcgggtatgcagagaaaaacgtcctgaaggttctgaagtttggaatatg
cctgaattctgccctgtctgccatagtcacgtagttcgggaagaagatagagtttctgtg
cgttgtgtcaatcctgagtgtgttgcaggagctattgaaaaaattcgtttttttgttggt
cggggagctttaaatatcgatcatttaggggtgaaggtaatcacaaagctgtttgaatta
gggttagtgcacacgtgtgcggacctatttcagctgactactgaagatttaatgcaaatt
cccgggatacgggaacgctctgcaagaaatattctagagagtatcgagcaagctaaacat
gtggatctagatcgttttcttgttgctctggggattcctctcattggaattggtgttgct
actgtactagctggccacttcgagactttagatcgggtaatttccgcgacttttgaagaa
cttctttcactagagggtattggagagaaggtggctcatgctattgctgagtatttttca
gactctacgcatcttaacgaaatcaagaaaatgcaggatttaggagtgtgtatatctcct
tatcataaatcaggatctacgtgttttggcaaggcttttgtgatcacagggacgttagag
ggaatgtctcggttagatgcagaaactgctatccggaattgtgggggtaaggtaggctcc
tctgtctcgaaacagaccgattacgtagttatggggaataacccaggatctaaattagag
aaggctaggaaattgggagtctctatcttagatcaagaagcctttacaaatctaattcat
ttagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (13)   
   Pfam (13)   
All databases (34)   

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