KEGG   Clostridium pasteurianum BC1: Clopa_3321
Entry
Clopa_3321        CDS       T02645                                 
Name
(GenBank) DNA/RNA helicase, superfamily I
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
cpas  Clostridium pasteurianum BC1
Pathway
cpas03420  Nucleotide excision repair
cpas03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpas00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Clopa_3321
   03430 Mismatch repair
    Clopa_3321
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpas03400]
    Clopa_3321
Enzymes [BR:cpas01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Clopa_3321
DNA repair and recombination proteins [BR:cpas03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Clopa_3321
   MMR (mismatch excision repair)
    Other MMR factors
     Clopa_3321
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 Viral_helicase1 UvrD_C_2 AAA_12 ResIII DEAD AAA_30 AAA_11 AAA_22 Yuri_gagarin Imm71 PcrA_UvrD_tudor DFP AAA_16
Other DBs
NCBI-ProteinID: AGK98118
UniProt: R4K6E6
Position
complement(3307424..3309430)
AA seq 668 aa
MKYSLDKNQLEAVTTEYNNVLIVAAPGSGKTTVIINRTAYLIKNKAVKPENIIIITFTKA
AALNMKQRYNALFNNIGEPFFGTFHGLFYKILRRHCNSINIIQAYEGYRVVKKVLEPYMD
EVSEDKLREIINDISKYKNSKYSFEEFIPSIEKSIFKQCYDAYETYKFEKNVMDFDDLQL
KCLELFKKDERLLKGYRNLFKYMLVDEFQDCDSLQIEMLKLLNENNNLYAVGDEDQCIYG
FRGSRPDCMVDFHKIFNQGKKIYLNINYRSVCNVVNISKNLIKNNIMRNEKHIKANKNEK
GNISILNNINENSQAEDVSENIIKHKIINNLQFRDFAILYRTNVESRGLIDNFIRKSIPF
RLLDKEYNFFEHFICKDILSYLKLSINSSDKEAFLRIINKPFRYIGKSNLDIIRKHEYKE
DLFEVLKNIEDLPVYQMKNIDKLKRDIQKLNKMSLGLAIQYVVIELGYRDYIVEYAKKYK
LEIQELEDIIEEFKKAAEEYNSIITFLVHVEEVGEKLKNNRKETKKDGIILSTMHGVKGM
EFKNVFIINCCEENIPHKNSLPDNIEEERRLFYVGITRAIDNLWICFSRDIRGKNKEPSR
FIKECELDFNEDCNGGFKVGDKVKHMSFGEGKIIFLDSKIIEIEFSDGVNRKFDTVILGN
NRLIDKVR
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgaagtacagtttagataaaaatcaattagaagcagttactacagaatataataatgta
ttaattgtagcagcaccaggttctggaaaaaccacagttataataaacagaacggcctac
ctcataaaaaataaagctgtgaaacctgaaaatattattattataacttttacaaaagcc
gctgcattaaatatgaaacaaagatataacgctctatttaataatattggagaaccattc
tttggtacatttcacggacttttttataaaattttgagaagacactgcaattcgataaat
attatacaagcctatgaaggttatagagtagtaaaaaaggttcttgaaccctatatggat
gaagtaagtgaggataagttaagggaaataataaatgatatctctaaatataaaaattcc
aaatattcttttgaagaatttataccatccattgaaaaatctatttttaaacagtgctat
gacgcttatgaaacctataaatttgaaaaaaacgttatggattttgatgatttacagctg
aagtgcttggaattatttaaaaaggatgaaaggcttttgaagggctacaggaatttattt
aaatatatgctggtggatgaatttcaggattgcgattctctccaaatagaaatgcttaag
cttctaaatgaaaataataatttatatgcagtgggagatgaggatcagtgtatatatggg
tttagaggttcaagaccagattgcatggtagattttcataagatatttaatcagggaaaa
aagatatatttgaatataaattacagaagcgtatgcaatgtagttaatatatcaaaaaat
ctcataaaaaataatattatgagaaatgaaaagcacataaaggccaataaaaatgaaaag
ggaaatatcagtatattaaataacattaacgaaaattctcaggcagaggatgtgtctgaa
aatattataaagcataaaattataaacaatttacaatttagggattttgccattctatac
agaactaatgtggaaagtcgaggcttaatagataattttataagaaagagtatacctttt
agacttttagataaagagtacaatttttttgagcactttatatgcaaggatatactttct
tatttaaagctcagtattaatagcagtgataaagaagcttttttgaggataataaataaa
ccctttagatatattggaaagtcaaatttagatataattagaaaacatgaatataaagaa
gatttatttgaagtacttaaaaatatagaggatttaccagtttatcagatgaaaaacatt
gataaattaaagagagatattcaaaaactcaataaaatgtctttagggctagctatacag
tatgtagtaattgaactgggttatagggattatattgtggaatatgctaaaaaatataag
cttgaaattcaggaattggaggatataatagaggaatttaaaaaggcggcagaggaatat
aactctataattacatttttggttcatgtagaggaagtaggagagaagttaaaaaataat
agaaaagagactaaaaaggatggtatcatacttagtactatgcacggagtaaaaggcatg
gaattcaaaaacgtgttcattataaactgctgtgaagaaaatataccccataaaaatagc
ttgccggataatatagaggaagagaggagacttttttatgttggtataaccagagctatt
gataatctctggatatgctttagcagggatattaggggaaaaaataaagagcctagtaga
tttataaaggaatgtgagcttgattttaatgaagactgtaacggaggctttaaggtaggc
gataaggtaaagcatatgtcctttggagagggtaaaataatatttttagacagcaaaatt
atagaaattgaattttctgatggagtaaatagaaaatttgatactgtgatcctggggaat
aataggcttattgataaggttagataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (27)   

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