KEGG   Clostridium pasteurianum DSM 525 = ATCC 6013: CLPA_c36830
Entry
CLPA_c36830       CDS       T03753                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cpat  Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpat03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CLPA_c36830 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpat03021]
    CLPA_c36830 (rpoB)
   03400 DNA repair and recombination proteins [BR:cpat03400]
    CLPA_c36830 (rpoB)
Enzymes [BR:cpat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CLPA_c36830 (rpoB)
Transcription machinery [BR:cpat03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CLPA_c36830 (rpoB)
DNA repair and recombination proteins [BR:cpat03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CLPA_c36830 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AJA53727
UniProt: A0A0H3J8F2
Position
complement(3946546..3950250)
AA seq 1234 aa
MVHPVQVGKRTRMSFSKQHEIGKMPNLIEIQLDSYEWFLKEGLQEIFDDINPIQDYTGNL
VLEFVGYKLDMENIKYSVEECKERDTTYAAPLKVKVRLLNKDTGEVKEQEVFMGDFPLMT
EQGTFVINGAERVIVSQLVRSPGVYYDFLVDKTGKKLFSSTVIPNRGAWLEYETDSNSVI
YVRIDKTRKLPITILARAMGYGSDADIIEYFGEEERLKSTIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAVSLIDSLFFDPKRYDLSRVGRYKFNKKLAISLRIANKIAAEDIINDETG
EIIVQKGERIDRDKAIEIQNCGINKVDIIMDDKIVRIIGNHFVDIKHFIKFDISDLNIKE
LVHYPVLNEILQNYTEEDSIKEQLKKNIYRLVPKHIVKDDIYATISYELGLAYGIGNVDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYAKVNDYGFIESPYRIVDKKNGKVLNDIKYFTADEEDQFLIAQANEP
LDQDGNFVDSKITVRTRDDVLVVSNTEVDLMDVSSRQIVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEFKAAVDSGVLPKAKHAGVVDYVSANEVRVKRDDNGSV
DSYRLLKFKRSNQGTCINQRPIVCKGERVDVGTVLADGPSTDLGEIALGKNIRMGFITWE
GYNYEDAMLISEELVREDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGDDALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDIKVFTRENGDELPPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAAANLGWHIATPVFDGATEPEIVECLQKA
GYDEDGKTLLYDGRTGEAFDSRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTFKSDDVVGRVKTYESIVKGENIPEPGVPES
FKVLIKELQALCLDVKVLAGDNEEIKLKDSVDEGLEGLDVNIEGNEDSVPPSPPDDYVES
DDQDVEEDIELDYDDLPLDDLQDGLELEDFNDEH
NT seq 3705 nt   +upstreamnt  +downstreamnt
atggtacatcctgtgcaagtaggtaaaagaacaagaatgagtttttctaagcagcatgaa
attggaaagatgcctaatcttatagaaatacaattagattcatatgaatggtttcttaaa
gaaggtcttcaagaaatatttgatgacattaatccgattcaagattatacaggtaatctt
gttctagagtttgtaggatacaaacttgatatggaaaatatcaagtattctgtagaggaa
tgtaaagaaagagatactacatatgcagcacctttaaaggtaaaagttagattacttaac
aaagatactggtgaagttaaagaacaggaagttttcatgggagactttccgttaatgacg
gaacaaggaacctttgtaattaatggtgcagaaagagttatagtaagtcagctagtaaga
tcaccaggagtttattatgattttttagttgataaaactggtaagaaattgttttcatct
acagtaatacctaatagaggcgcttggttagaatatgaaactgatagtaatagtgttatt
tatgtaagaatagataagactagaaaattgccaattactatattagctagagctatggga
tatggttcagatgcggatattattgaatattttggagaagaagaaagactaaaatcaaca
attgaaaaagataatactaaaactaaagaagaagcattattggaaatatataaaagattg
agacctggtgagcctcctactgtagatagtgcggtgtcacttattgattctctattcttt
gatcctaaaagatatgatttatctagagtaggaagatataagtttaacaaaaaactagct
ataagtcttagaattgcaaataaaatagcagcagaggacataattaatgatgaaaccggt
gaaataatagttcaaaagggagaaagaatagacagagataaagctatagaaattcaaaat
tgcggtattaataaagtggatattataatggatgataagattgttagaattataggaaac
cattttgttgatataaagcattttataaaatttgatattagtgatttaaatatcaaagaa
ttagtccattatcccgtgttaaatgaaatattgcaaaattatactgaagaagattctata
aaggagcagcttaaaaaaaatatatatagacttgttccaaagcatattgtaaaagatgat
atatatgcaacaataagttatgaactaggattagcttatggtataggtaatgtagatgat
attgatcatttaggaaatagaagacttagatctgttggtgaattattacaaaatcaattt
agaattggattatcaagaatggaaagagtagttaaggaaagaatgactattcaggatcag
gaagtgataactcctcaagcacttataaatataagaccagtagcagcagctattaaggaa
ttctttggtagttcacagctttcacaatttatggatcagactaatccattgtcagaatta
acccataaaagaaggttgtcagcacttggaccgggtggactttcaagagaaagagcagga
ttcgaggttagagatgttcatcattcacactatggtagaatgtgtcctatagagacgcca
gaaggaccgaatataggtcttataaattcattagctacttatgctaaagttaatgactat
ggatttatagaaagtccatatagaattgttgataaaaagaatggtaaagtattaaatgat
ataaaatactttactgcagatgaagaagaccaatttttaattgcacaggccaatgaacct
ttggatcaagatggtaattttgtagatagtaaaataactgtcaggactagagatgacgtg
ttagttgtatctaatacagaggttgacttaatggatgtatcttcaagacagattgtatca
gttgctacagctatgataccattccttgaaaatgatgatgcaagccgtgcacttatggga
tcaaacatgcaacgtcaagctgtaccattattgaagcctcaagcacctatagtaggaact
ggtatagagtttaaagcagctgttgactcgggagttcttcctaaagcaaagcatgcaggt
gtggttgattatgtaagtgctaatgaagtaagggtaaagagagacgataatggatctgtt
gattcttatagattattaaaatttaagagatcaaaccaaggtacatgtataaatcaaaga
ccaatagtatgtaaaggtgaaagagtagatgtaggtacggtgttggctgatggtccatct
actgatttaggagaaatagcattaggtaagaatatccgtatgggatttataacttgggaa
gggtataactacgaagatgctatgcttatatctgaagaacttgttagagaagatgtgttt
acatccattcatatagaagaatatgaagcagaagctagggatactaaacttggacctgaa
gaaattactagagatatacctaatgtaggcgatgatgctcttaaagacatagacgaaaga
ggaattataagaataggtgcggaagtacgttctggagatatattagttggaaaagtaaca
cctaagggtgaaactgaattaacagcagaagaaaggcttttaagagctatttttggagaa
aaggcaagagaagtaagagatacatcacttagagtcccacatggagaagcaggtataatt
gttgatataaaagtcttcacaagagaaaatggagatgaattgcctccaggagttaatgaa
ttagtaagatgttatatagcacaaaagaggaagatatctgttggagataagatggcagga
agacacggtaacaaaggtgttatttcaagagtcttaccagaggaggatatgccattctta
ccggatggaagaccacttcaaatatgcttaaatccattaggtgttccttcacgtatgaat
ataggtcaggttttagaagtccatttaggatgggcagcggctaatcttggatggcatatt
gcaacgcctgtatttgatggagctacagagccagaaatagttgagtgcttacaaaaggca
ggatatgatgaagatggtaagactttgttatatgacggaagaactggagaagcttttgat
agtagagttacagtaggatatatgtatatattaaagttggcgcatttggttgatgataag
atacatgctagatctacgggaccatattctttagttacacaacaaccactaggtggtaaa
gcacagtttggtggtcagaggtttggagaaatggaagtatgggcacttgaagcttatggt
gctgcacatactctgcaagaaatattaacttttaaatctgatgatgttgttggtagagtt
aagacatatgagtctatagttaagggtgagaatataccagaaccaggcgttccagaatct
tttaaagttctcataaaggaacttcaggcactatgtcttgatgtaaaagttctagcagga
gataatgaagaaataaaattaaaagattcagtagatgaaggattagaaggtttagatgta
aatattgaaggaaatgaagatagtgttcctccatctcctccagatgattacgttgaatct
gatgatcaagatgttgaggaagacattgaattggattatgatgatttacctttagatgat
cttcaagatggattagaacttgaagatttcaatgatgaacactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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