KEGG C.perfringens: CPE0553

Clostridium perfringens 13: CPE0553

Entry

CPE0553 CDS C.perfringens

Gene name nanJ

Definition exo-alpha-sialidase

Orthology K01186 sialidase-1 [EC:3.2.1.18]

Pathway cpe00511 Other glycan degradation
cpe00600 Sphingolipid metabolism

Class Metabolism; Lipid Metabolism; Sphingolipid metabolism
[PATH:cpe00600]
Metabolism; Glycan Biosynthesis and Metabolism; Other glycan
degradation [PATH:cpe00511]
Environmental Information Processing; Signaling Molecules and
Interaction; Bacterial toxins

SSDB

Motif Pfam: Sialidase F5_F8_type_C BNR Sialidase_penC fn3 DUF1670
PROSITE: FA58C_3 FN3

Other DBs NCBI-GI: 18309535
NCBI-GeneID: 988807
JCVI-Pathema: CPE0553
UniProt: Q8XMY5

Structure

PDB: 2V72

Position 681830..685351

AA seq 1173 aa
MKSKKIIATLVASLVISNMGGYLVKANPNVNHKAVIIEDRQAIIETAIPQSEMTASATSE
EGQDPASSAIDGNINTMWHTKWNGSDALPQSLSVNLGKARKVSSIAITPRTSGNNGFITK
YEIHAINNGVETLVAEGTWEENNLVKTVTFDSPIDAEEIKITAIQGVGGFASIAELNVYE
IKGEVDEIANYGNLKITKEEERLNITGDLEKFSSLDEGTIVTRFNMNDTSIQSLIGLSDG
NKANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFNKGINTLALKIEKGVGAKIFL
NGSLVKTVSDPNIKFLNAINLNSGFIGKTDRANGYNEYLFRGNIDFMNIYDKPVSDNYLL
RKTGETKAPSEDSLLPDDVYKTQPVELFYPGYLESRGYRIPALETTKKGTVLASIDVRNN
GDHDAPNNNIDVGIRRKEVNGEWEEGKVILDYPGKSAAIDTSLMSATIEENGIEKERIFL
IVTHFPEGYGFPNTEGGSGYKEIDGKYYFILKDAQNNEYTVREDGIVYNSEGNQTDYVMK
NDKTLIQNGEEVGNALLSNSPLKAVGTAHIEMIYSDDDGKTWSEPEDLNPGLKKEWMKFF
GTAPGKGIQIKNGEHKGRLVFPIYYTNQNNFQSSAVIYSDDFGETWKLGESPIDTASVSS
ETVSSGTQLTECQVVEMPNGQLKLFMRNTGSYTKIATSFDGGATWHDEVPEDTSLREPYC
QLSVINYSGKINGKDAIIFSNPDASSRVNGSVKVGLINENGTYDNGEPRYEFDWIYNKTV
KPGSFAYSCLTELPDGNLGLFYEGEGAGRMAYTEFDLNYLKFNASEDSPSASVQSIEVLD
EDLAYNSGEEVSIKVNFNQLVSIIGDRKITLDIGGVDVPLNMVNYEGKSSAIFKGTIPEG
INQGNYEIKLKENNTLELNTVYNKVSTFNGLDNTGINVQIGELKTTVGNSTIKVNDEVQV
GSAFEAILGIEGLNGDTEVYSAEYLFEYNVEAFILNEITSFNDSLFVKSKEVEPGKVRIL
VASLGNEIEKDSDLVKVNLTPKISSELEVLGLTTALVGAGDGNTHDLELSSKEVKINEEA
SGEIVVNPVQNFEIPEINKKNVKLTWNAPITTEGLEGYVIYKDGKKLSEVPAESTEFVVS
KLNRHTIYNFKVAAKYSNGELSAKESKTIRTAR

NT seq 3522 nt +upstreamnt +downstreamnt
gtgaaaagtaaaaaaattatagctacacttgttgcaagtttagttatttctaatatggga
ggatatttagtaaaagctaatcctaatgtaaatcataaggcagttattatagaagataga
caagctattattgaaactgctattccacaatcagaaatgacagctagtgcaacttcagaa
gagggccaagatccagcttcaagtgctattgatggaaatataaatactatgtggcataca
aaatggaatggtagtgatgcgcttccacagagtttatcagtaaacttaggaaaagctaga
aaagttagttctatagctattacaccaagaacaagtggaaacaatggatttataactaag
tatgaaattcatgctattaataatggagtagaaactttagttgcagagggaacatgggaa
gaaaataatttagttaaaactgtaacttttgattctcctattgatgcagaagagataaaa
ataactgcaattcaaggtgttggtggatttgcttcaatagcagagttaaatgtttatgaa
atcaaaggcgaagtagatgaaattgccaactatggaaacttaaaaataactaaggaggaa
gaaagattaaatataactggtgatttggaaaaattctcctcactagatgaaggaactata
gtaactagatttaatatgaatgatacctcaattcaaagtttaattggtttaagtgatgga
aataaagcaaataactatttttcactttatgtaagtggaggaaaagtaggatatgagctt
agaagacaagaaggaaatggagattttaatgtacatcacagtgcagatgttacttttaat
aaaggaataaatactttagctttaaaaatagaaaagggagtaggagctaagatattttta
aatggttctctggttaaaacggtatcagatccaaatattaaatttttaaatgcaataaat
cttaatagtggatttattggtaaaactgatagagcaaatgggtacaatgagtacttattt
agaggaaatatagattttatgaatatttatgataaaccagtaagtgataattatttgtta
agaaaaacaggggaaactaaggcgccatcagaggatagtttattgccagatgatgtttat
aaaacacaaccagtagaattattctatcctggatatttagaatcaagaggatatagaatt
cctgctttagaaacaactaaaaaaggaacggttttagcttctatagatgttagaaataac
ggagatcatgatgctcctaataataacatagatgtaggtataagaagaaaagaagtaaat
ggggaatgggaagaaggaaaagtaatattagattatccaggtaaatcagcagctatagat
acttctcttatgtcagctaccatagaagagaatggaattgaaaaagagagaatatttctt
atagtaactcatttcccagaaggttatggattccctaatacagagggcggaagtggatat
aaagaaattgatggaaaatattattttatattaaaagatgctcaaaataatgaatataca
gttagagaagatggaattgtttataattcagaaggaaatcaaactgattatgtaatgaaa
aatgataaaacccttattcaaaatggagaagaagttggaaatgctttactaagcaattct
ccacttaaggcagttggaactgctcatattgaaatgatttatagtgatgatgatggtaaa
acatggagtgaaccagaggatttaaatccaggacttaagaaagaatggatgaaattcttt
ggaactgcaccaggaaagggaattcaaataaaaaatggagagcataaaggtcgattagta
ttcccaatatactatactaatcaaaataatttccaatcaagtgctgtaatttatagtgat
gactttggtgaaacttggaagttgggagaatctccaatagatacagcttctgtaagctct
gaaacagtttcttcaggaacacagttgacagagtgccaagtagttgaaatgccaaatgga
caactaaaattatttatgagaaatactggttcatatacaaagattgcaactagttttgat
ggaggagcaacatggcatgatgaagttccagaagatacttctttaagagagccttattgt
caattaagtgttataaattatagtggaaaaataaatggtaaagatgcaattatattctca
aatccagatgcaagtagtagagtaaatggaagtgttaaggttggcttaataaatgagaat
ggaacttatgacaatggagaaccaagatatgaatttgattggatttataataaaacagtt
aagccaggttcatttgcttattcttgtttaacagagttaccagatggaaacctaggatta
ttctacgagggtgaaggggcaggcagaatggcatatactgaatttgatttaaattacctt
aagtttaatgcttctgaagattcaccatcagcttcagttcaatcaattgaagttttagat
gaagatttagcttacaattctggagaggaagtttcaataaaagtaaactttaatcaatta
gttagtatcataggagatagaaagataactttagatataggtggagtagatgtaccacta
aatatggttaattatgaagggaagagctcagctatatttaaaggaactataccagaagga
attaatcaaggaaattatgaaataaagcttaaagaaaataatactttagaacttaatact
gtttataataaagtttcaactttcaatggattagataatacaggaattaatgtacagatt
ggtgaattaaaaacaactgttggaaattcaaccataaaggttaatgatgaagttcaagtt
ggctcagcatttgaagctatattaggaattgaaggattaaatggagatacagaagtgtat
tcagcagaatatttatttgagtataatgtagaagcatttatattaaatgaaattacttca
tttaatgattctttatttgtaaagagtaaagaagttgaaccaggaaaagttagaatatta
gtagcttctttagggaatgaaatagaaaaagattcagatctagtaaaagttaacttaact
ccaaagatttcttctgaattagaagttttaggattaacaacagctttagtaggagctgga
gatggaaatactcatgacttagaactttcaagtaaggaagttaaaattaatgaagaagct
tcaggagagatagtagtaaatccagtacaaaattttgaaattccagaaataaataagaaa
aatgttaaattaacatggaatgctccaataacaactgaggggttagagggatatgtaata
tataaagatggaaagaaattatcagaagttccagctgaatctacagagtttgtggtttca
aaattaaatagacatactatttacaattttaaagttgcagctaaatattcaaatggagaa
ctttcagctaaagaaagtaagactataagaactgctaggtaa

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-PATHEMA-CPE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (8)   
   Pfam (6)   
   PROSITE (2)   
All databases (22)

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