KEGG T00378: CPF

Clostridium perfringens ATCC 13124: CPF_0532

Entry

CPF_0532 CDS T00378

Definition

exo-alpha-sialidase

Orthology

K01186

sialidase-1 [EC:3.2.1.18]

Organism

cpf Clostridium perfringens ATCC 13124

Pathway

cpf00511	Other glycan degradation
cpf00600	Sphingolipid metabolism

Class

Metabolism; Lipid metabolism; Sphingolipid metabolism [PATH:cpf00600]
Metabolism; Glycan biosynthesis and metabolism; Other glycan degradation [PATH:cpf00511]

SSDB

Motif

Pfam:

Sialidase BNR_2 F5_F8_type_C BNR_3 BNR Sialidase_penC fn3 DUF1670

Other DBs

NCBI-GI:

NCBI-GeneID:

JCVI-CMR:

JCVI-Pathema:

UniProt:

Structure

PDB:

2VO8 2V73

Position

629171..632692

AA seq 1173 aa
MKSKKIIATLVASLVISNMGGYLVKANPNVNHKAVIIEDRQAIIETAIPQSEMTASATSE
EGQDPASSAIDGNTNTMWHTKWNGSDALPQSLSVNLGSSRKVSSIAITPRTSGNNGFITK
YEIHAINNGVEALVAEGTWEENNLVKTVTFDSPIDAEEIKITAIQGVGGFASIAELNVYE
IKGEVDEIANYGNLKITKEEERVNITGDLEKFSSLEEGTIVTRFNMNDTSIQSLIGLSDG
NKANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFNRGINTLALKIEKGIGAKIFL
NGSLVKTVSDPNIKFLNAINLNSGFIGKTDRANGYNEYLFRGNIDFMNIYDKPVSDNYLL
RKTGETKAPLEDSLLPDDVYKTQPVELFYPGYLESRGYRIPALETTKKGTVLASIDVRNN
GDHDAPNNNIDVGIRRKEVNGEWEEGKVILDYPGKSAAIDTSLMSATIEENGIEKERIFL
IVTHFPEGYGFPNTEGGSGYREIDGKYYFILKDAQNNEYTVREDGIVYNSEGNQTDYVMK
NDKTLIQNGEEVGNALLSNSPLKAVGTAHIEMIYSDDDGKTWSEPEDLNPGLKKEWMKFF
GTAPGKGIQIKNGEHKDRLIFPIYYTNQNNFQSSAVIYSDDFGETWKLGESPIDTASVSS
ETVSSGTQLTECQVVEMPNGQLKLFMRNTGSYTRIATSFDGGATWHDEVPEDTSLREPYC
QLSVINYSGKINGKDAIIFSNPDASSRVNGSVKVGLINENGTYDNGEPRYEFDWIYNKTV
KPGSFAYSCLTELPDGNLGLFYEGEGAGRMAYTEFDLNYLKFNASEDSPSASVQSIEVLD
EDLAYNSGEEVSIKVNFNQLVSIIGDRKITLDIGGVDVPLNMVNYEGKSSAIFKGTIPEG
INQGNYEIKLKENNTLELNTVYNKVSTFNGLDNTGINVQIGELKTTVGNSTIKVNDEVQV
GSAFEAILGIEGLNGDTEVYSAEYLFEYNAEAFILNEITSFNDSLFVKSKEVEPGKVRIL
VASLGNEIEKDSDLVKVNLTPKISSELEVLGLTTALVGAGDGNTHDLELSSKEVKINEEA
SGEIVVNPVQNFEIPEINKKNVKLTWNAPITTEGLEGYVIYKDGKKLSEVPAESTEFVVS
KLNRHTIYNFKVAAKYSNGELSAKESKTIRTAR

NT seq 3522 nt +upstreamnt +downstreamnt
atgaaaagtaaaaaaattatagctacgcttgttgcaagtttagttatttctaatatggga
ggatatttagtaaaagctaatcctaatgtaaatcataaggcagttattatagaagataga
caagctattattgaaactgctattccacaatcagaaatgacagctagtgcaacttcagaa
gagggccaagatccagcttcaagtgctattgatggaaatacaaatactatgtggcataca
aaatggaatgggagtgatgcgcttccacagagtttatcagtaaacttaggaagttctaga
aaagttagttctatagctattacaccaagaacaagtggaaacaatggatttataactaag
tatgaaattcatgctattaataatggagtggaagctttagttgcagagggaacctgggaa
gaaaataatttagttaaaactgtaacttttgattctcctattgatgcagaagagataaaa
ataactgcaattcaaggtgttggtggatttgcttcaatagcagagttaaatgtttatgaa
atcaaaggcgaagtagatgaaattgctaactatggaaacttaaaaataactaaggaggaa
gaaagggtaaatataacaggtgatttagaaaaattctcctcactagaagaaggaactata
gtcactagatttaatatgaatgatacctcaattcaaagtttaattggtttaagtgatgga
aataaagcaaataactatttttcactttatgtaagtggaggaaaagtaggatatgagctt
agaagacaagaaggaaatggagattttaatgtacatcacagtgcagatgttactttcaat
agaggaataaatactttagctttaaaaatagaaaagggaataggagctaagatattttta
aatggttctctggttaaaacggtatcagatccaaatattaaatttttaaatgcaataaat
cttaatagtggatttattggtaaaactgatagagcaaatgggtataatgagtatttattt
agaggaaatatagattttatgaatatttatgataaaccagtaagtgataattatttgtta
agaaaaacaggagaaactaaagcaccattagaagatagtttattgccagatgatgtttat
aaaacacaaccagtagaattattctatcctggatatttagaatcaagaggatatagaatt
cctgctttagaaacaactaaaaaaggaacggttttagcttctatagatgttagaaataac
ggagatcatgatgctcctaataataacatagatgtaggtataagaagaaaagaagtaaat
ggagaatgggaagaaggaaaagtaatattagattatccaggtaaatcagcagctatagat
acttctcttatgtcagctaccatagaagagaatggaattgaaaaagagagaatatttctt
atagtaactcatttcccagaaggttatggattccctaatacagagggtggaagtggatat
agagaaattgatggaaaatattattttatattaaaagatgctcaaaataatgaatataca
gttagagaagatggaattgtttataattcagaaggaaatcaaactgattatgtaatgaaa
aatgataaaacccttattcaaaatggagaagaagttggaaatgccttactaagcaattct
ccacttaaggcagttggaactgctcatattgaaatgatttatagtgatgatgatggtaag
acatggagtgaaccagaggatttaaatccagggcttaagaaagaatggatgaaattcttt
ggaactgcaccaggaaagggaattcaaataaaaaatggagagcataaagatagattaata
ttcccaatatactatactaatcaaaataatttccaatcaagtgctgtaatttatagtgat
gactttggtgaaacttggaagttgggagaatctccaatagatacagcttctgtaagctct
gaaacagtttcttcaggaacacagttgacagagtgccaagtagttgaaatgccaaatgga
caactaaaattatttatgagaaatactggttcatatacaagaattgcaactagttttgat
ggaggagcaacatggcatgatgaagttccagaagatacttctttaagagagccttattgt
caattaagtgttataaattatagtggaaaaataaatggtaaagatgcaattatattctca
aacccagacgcaagtagtagagtaaatggaagtgttaaggttggcttaataaatgagaat
ggaacttatgacaatggagaaccaagatatgaatttgattggatttataataagacagtt
aagccaggttcatttgcttattcttgtttaacagagttaccagatggaaacctaggatta
ttttatgagggtgaaggggcaggcagaatggcatatactgaatttgatttaaattacctt
aagtttaatgcttctgaagattcaccatcagcttcagttcaatcaattgaagttttagat
gaagatttagcttacaattctggagaggaagtttcaataaaagtaaactttaatcaatta
gttagtatcataggagatagaaagataactttagatataggtggagtagatgtaccacta
aatatggttaattatgaagggaagagctcagctatatttaaaggaactataccagaagga
attaatcaaggaaattatgaaataaagcttaaagaaaataatactttagaacttaatact
gtttataataaagtttcaactttcaatggattagataatacaggaattaatgtacagatt
ggtgaattaaaaacaactgttggaaattcaaccataaaggttaatgatgaagttcaagtt
ggctcagcatttgaagctatattaggaattgaaggattaaatggagatacagaagtgtat
tcagcagaatatttatttgagtataatgcagaagcatttatattaaatgaaattacttca
tttaatgattctttatttgtaaagagtaaagaagttgaaccaggaaaagttagaatatta
gtagcttctttagggaatgaaatagaaaaagattcagatctagtaaaagttaacttaact
ccaaagatttcttctgaattagaagttttaggattaacaacagctttagtaggagctgga
gatggaaatactcatgacttagaactttcaagtaaggaagttaaaattaatgaagaagct
tcaggagagatagtagtaaatccagtacaaaattttgaaattccagaaataaataagaaa
aatgttaaattaacatggaatgctccaataacaactgaggggttagagggatatgtaata
tataaagatggaaagaaattatcagaagttccagctgaatctacagagtttgtggtttca
aaattaaatagacatactatttacaattttaaagtggcagctaaatattcaaatggagaa
ctttcagctaaagaaagtaagactataagaactgctaggtaa

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JCVI-CMR (1)   
   JCVI-PATHEMA-CPF (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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