KEGG T00378: CPF

Clostridium perfringens ATCC 13124: CPF_1474

Entry

CPF_1474 CDS T00378

Gene name

lacZ

Definition

beta-galactosidase (EC:3.2.1.23)

Orthology

K01190

beta-galactosidase [EC:3.2.1.23]

Organism

cpf Clostridium perfringens ATCC 13124

Pathway

cpf00052	Galactose metabolism
cpf00511	Other glycan degradation
cpf00600	Sphingolipid metabolism
cpf01100	Metabolic pathways

Class

Metabolism; Carbohydrate metabolism; Galactose metabolism [PATH:cpf00052]
Metabolism; Lipid metabolism; Sphingolipid metabolism [PATH:cpf00600]
Metabolism; Glycan biosynthesis and metabolism; Other glycan degradation [PATH:cpf00511]

SSDB

Motif

Pfam:

Glyco_hydro_2_N Glyco_hydro_2_C Big_4 Glyco_hydro_2 Dockerin_1

Other DBs

NCBI-GI:

NCBI-GeneID:

JCVI-CMR:

JCVI-Pathema:

UniProt:

Position

complement(1667508..1671575)

AA seq 1355 aa
MQSFNKRGTALGAAIAFALTLAPTLVMAETRQIPESETVNVGFIKDGERSTIFNQNWKFF
KGDPSGAEGVDFDDSSWRGLNLPHDWSIEGDFTVEGEAESGFLLGGTGWYRKAFVVPEKY
NGKDFTLNFDGVYMNAEVYVNGKKVGEHNYGYTSFAFDITEALICDGQTENIIAVKVSNP
VPTSRWYSGSGIYRDVTLSVTDSIHVAHAGTTVTTPKLEEQKDGDVDVAIETIVENESKD
NSMVTVKSTVVNSKGEEVSESVINEKSIGANESYTFNQTAIVNNPGLWSVDNPNMYKVKS
EVLVDGNVIDTYFTDFGFRYYNFDKDTGFSLNGENIKLKGVCMHHDQGALGAASYYRAVE
RQMEKMKEMGVNAIRVSHNPASEMLLEICNRLGLLVINEAFDTWTNPKNGNVNDFSKYFN
EVIGEDNEILNGSPEMTWGEFEARSMVKNSKNNPSIIMWSIGNEVLEGISGSASNYTNVA
QNIIDWIKDEDETRHVTIGDNRTKNGDRTAEAISEVVDDNDGLVGFNYANEAQVAQQRAN
HPDWTLYASETSSAIHTRGYYKTKGIDYSNHRISEYDNNQTRVGWGHSASDAWKFVIKND
YNAGEFVWTGFDYIGEPTPWNGTGTGTVGGGNGAAPKSSYFGIVDTAGFEKDIYYLYQSQ
WNDDVNTLHVLPTWNREDIVIENGNVEVNVFTDAHKVELYLNDEKIGEQTSTEHTTDAGY
KYYTFGNDSLYPVFNVPYKEGTLTARAYDKEGNEITNTEGRNTVKTTGEASTVRLSADRD
TIDSDGYDLSYITVDIVDENGNIVQNADNRLNFELEGNGKIVGVDNGDQTDTDSYKPTSD
TEASRKALSGKALVIVQSTKDAGNIRLNVSGEGLQSQSIEINTVNNAGEDKFLESYEIVK
DYYVNLNEKPELPSTVEGRYSDGTTETFNISWNDYDESQLNTPQVFKINGKLEGTDVAVN
VNVHVIGDVVSMENYSTFTYAGQTPTLPKTVKGYLADGNESEEFKVDWNLEGVDFSEPNT
TVEVLGEVSLLGKTYTVTSTVRVVEALKAAANLAINKDTNKDVPALSQSCVSQADNLNSI
NNGITNNGTDTRERWTNWNERDLTVNGEPKGAYVQLDWENKYNIDRLDLWLFTDNIYGRI
PKKVEISYKNEAGEYEVVTHSNTTEVSYLAGETTYFLDKVINTDSIRVYMQQPEVGKCIG
LSEVAVYEYVPQVSANEGNKLSEIKLDGEALEGFNPDTNEYTVNLKELPKTVEASGEENV
AITILPVHNNKSIIIARSESGAKNIYTVNYVLEESEGSADINEDGSINVGDLSIVSKYQG
EIISGNALSEKSDINKDGVVDKADIQIVMGKILGE

NT seq 4068 nt +upstreamnt +downstreamnt
atgcaatcatttaacaaaagggggacagctttaggagcagcaattgcatttgctttaacc
ttagcacctaccttagtaatggctgaaacaagacaaattcctgaatctgaaacagtaaat
gttggattcataaaagatggagagagatcaacaatattcaatcaaaactggaagtttttt
aagggagatccttctggtgctgaaggggtagactttgatgattcttcatggagaggacta
aacttacctcatgattggagtattgaaggagattttactgttgaaggggaagctgaaagt
ggattcttattaggaggaactggatggtatcgtaaagcctttgtagttcctgaaaagtat
aatggtaaggattttacattaaactttgatggcgtatatatgaatgctgaagtatatgta
aatggtaaaaaggttggtgagcataattatggatacacttcttttgcctttgatattact
gaagctttaatatgtgatggacaaactgaaaatataattgctgttaaggtatctaaccca
gtgccaactagtagatggtattctggaagtggaatttatcgtgatgtaactttaagtgta
acagattctattcatgttgcccatgcaggaacaacagttactactccaaaacttgaagag
caaaaagatggagacgtagatgtagctattgagactatagttgaaaacgagtccaaagac
aattctatggttactgtaaaaagtacagtagtaaattctaagggagaagaagttagtgag
tcagtaataaatgaaaaaagtataggagctaatgaaagttatactttcaatcaaactgct
attgtaaataatccaggtttatggtcagttgataatccaaatatgtataaggtaaaaagt
gaagtattagtagatggaaatgttatagatacttattttactgattttggttttagatat
tataattttgacaaagatactggattctctttaaatggagaaaatataaagttaaaaggt
gtttgtatgcaccatgaccaaggagctttaggagcagcatcttattatcgtgcagtagag
cgtcaaatggagaaaatgaaggaaatgggagtaaatgcaatccgtgtttctcataatcct
gctagtgaaatgttattagaaatttgtaatcgtttaggattgttggttattaatgaggcc
tttgacacatggacaaatccaaagaacggaaatgtaaatgacttttctaagtattttaat
gaagtaataggagaagataatgaaattttaaatggttctccagaaatgacatggggagag
tttgaagctagatctatggttaaaaactctaagaataacccatctataataatgtggtca
ataggtaatgaggtattagaaggaattagtggaagtgcatctaattatactaacgtagct
caaaatataattgattggattaaggatgaggatgaaacaagacatgttactataggagat
aatagaactaaaaatggagatagaacagcagaggctatttcagaggtggttgatgacaat
gatggattagttggttttaactatgcaaatgaagcacaggttgcacagcaaagagcaaac
catccagattggacattatatgcttctgaaactagtagtgcaatacacactagaggatat
tataaaacaaagggaatagattatagtaatcatcgtatttcagagtatgataataatcaa
acaagagttggttggggacattcagctagtgatgcttggaagtttgtaatcaaaaatgat
tataatgctggagaatttgtttggacaggatttgactatataggagagcctactccttgg
aatggtactggtacaggtacagttggtggaggtaatggagcagctccaaaatcaagttac
tttggtatagttgatactgcaggatttgaaaaagatatttattatttatatcaaagtcaa
tggaatgatgatgtaaatacattacatgtacttccaacgtggaacagagaagatatagtt
atagaaaatggaaatgttgaagtaaacgtatttactgatgctcacaaagttgaattatat
ctaaatgatgaaaagattggggagcaaacttcaactgagcatacaactgatgcaggatat
aaatactatacttttggaaatgattcattgtatccagtatttaatgttccttataaagag
ggtacattaactgctagggcatatgacaaagaaggaaatgaaatcacaaatacagaggga
agaaatacagtgaaaacaactggagaggcttctactgtaagattaagtgcagatagagat
actattgattcagatggatatgatttatcttatattactgtagatattgttgatgaaaat
ggcaatatagttcaaaatgcagataacagattaaattttgagttagaaggaaatggaaaa
attgtaggtgttgacaatggagatcaaactgatacagattcttataaacctacaagtgat
acagaagcttctagaaaagcattaagtggtaaggcattagtaatagttcaatcaactaag
gatgctggaaatataagattaaatgtttcaggtgagggattacaatctcaatctatagaa
attaatactgtaaataatgctggagaagataagttcttagaatcttatgaaatagttaaa
gactactatgttaatttaaatgaaaagccagagttaccaagtacagtagaaggaagatac
agtgatggaacaactgagacttttaatatttcatggaatgattatgatgaatcacaatta
aatactcctcaagtatttaagataaatggtaaattagaaggaacagatgtggctgtaaat
gtaaatgtccatgtaattggtgatgtggtttcaatggaaaattactcaacatttacttat
gctggacaaactccaacacttcctaagactgttaaaggatatttagctgatggaaatgaa
agtgaagagtttaaagtggattggaatttagaaggcgtagatttctctgagcctaataca
acagttgaagttttaggagaagtatccttattaggtaagacatatactgttacttcaaca
gtgcgtgtagttgaagctttaaaagctgctgctaacttagctataaataaggatactaat
aaagatgttcctgctttaagtcaaagttgcgtttctcaagctgataatttaaattctatt
aataatggaataactaataatggtacagatacaagagaacgttggacaaactggaatgaa
agagatttaactgtaaatggtgaacctaaaggggcatatgttcaattagattgggaaaat
aaatataatattgatagattagatttatggttatttactgataatatttatggaagaatt
cctaagaaagtagaaataagttataaaaatgaggctggtgaatatgaggtagttactcat
tcaaatacaacagaggtatcataccttgctggagaaacaacttatttcttagataaagta
ataaatactgatagtattcgtgtttatatgcaacaacctgaagtaggtaagtgtattgga
ttatcagaggttgcagtatatgagtatgtaccacaagtaagtgctaatgaaggtaataaa
ttatctgaaataaaattagatggcgaagccttagaaggatttaatcctgatactaatgaa
tatacagttaatttaaaagaattacctaaaactgtagaagcttcaggggaagaaaatgtg
gctataactatattaccagttcataataataaatcaataatcattgctcgttcagaatct
ggtgctaaaaacatctatactgtaaattatgtattagaagaatctgaagggtcagcagat
attaatgaggatggttctataaatgtaggagatttatccatagtatctaaatatcaagga
gagattatatcaggaaatgctttaagtgaaaaatctgatataaacaaagatggagtagta
gataaagctgatatccaaatagttatgggtaagatcttaggagaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (6)   
   KEGG ENZYME (1)   
   KEGG REACTION (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JCVI-CMR (1)   
   JCVI-PATHEMA-CPF (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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