KEGG   Cnuibacter physcomitrellae: B5808_06265
Entry
B5808_06265       CDS       T04797                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cphy  Cnuibacter physcomitrellae
Pathway
cphy03030  DNA replication
cphy03410  Base excision repair
cphy03420  Nucleotide excision repair
cphy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cphy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B5808_06265
   03410 Base excision repair
    B5808_06265
   03420 Nucleotide excision repair
    B5808_06265
   03430 Mismatch repair
    B5808_06265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cphy03032]
    B5808_06265
   03400 DNA repair and recombination proteins [BR:cphy03400]
    B5808_06265
Enzymes [BR:cphy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B5808_06265
DNA replication proteins [BR:cphy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B5808_06265
DNA repair and recombination proteins [BR:cphy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B5808_06265
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B5808_06265
   MMR (mismatch excision repair)
    DNA ligase
     B5808_06265
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B5808_06265
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 HHH PTCB-BRCT RNA_lig_T4_1
Other DBs
NCBI-ProteinID: ARJ04866
UniProt: A0A1X9LI39
Position
1332531..1334903
AA seq 790 aa
MSDATTTDALPEESAPDLAAAKAEADRLTTRILELRDEYYENDASTVTDAEYDAMVRRLG
ELERLHPELQSADSPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELDEWAAKVERDA
GRASVRYLSELKIDGLAINLRYEDGVLVTAATRGDGVVGEDVTQNVLQIESIPSRLQGTG
HPPLVEVRGEIFFPVEAFEELNRGQIEAGERVFANPRNAASGSLRQKREGKNDRQLALMH
ARLSRLRMLVHGIGAWPDPPVAAQSEVYDLLKGWGLPTSTHYRVFDTIDEVAGFIRYYGE
HRAAVEHQIDGIVVKVDDLALHAELGATSRAPRWATAYKYPPEEVNTKLLDIVVSVGRTG
RATPFAVMEKVEVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELR
DGTEREFVMPELCPECGTRLAPAKEGDIDLRCPNSRSCPAQVRGRVEHAGSRGALDIEGL
GEVSAAALTQPIEPATPPLVTEAGLFSLTMSDLFPIRAVVRDNETGLEKLTESGDPKLVT
PFRRRRTKKDPAFDEMAVPGSPEFWGDAQSVPSSAAVELLANIEAAKTKPLWRILVALSI
RHVGPVAARALADWFGSLDAIRSATRDELAAVEGVGGIIADALIDWFTVDWHVEILDRWA
AAGVQFATPGHPGPGASVGAGGVLEGLTVVATGSLEGYTREGAQEAIINAGGKAASSVSK
KTDFVAAGPGAGSKLTKAEQLGLRILDAAEFHLLVTQGPDALAPAGDPADDAAGEAHEEA
PAQEDDGPAE
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgagcgacgcgacgacgaccgacgccctcccggaggagtccgcccccgacctcgcggcg
gccaaggcggaggccgaccgcctcaccacccgcatcctcgagctgcgcgacgagtactac
gagaacgacgcctcgaccgtcaccgacgccgagtacgacgcgatggtgcgccgcctcggc
gagctcgaacggctgcaccccgagctgcagtccgccgacagccccacccagaccgtcggc
ggccgcgccgagaccaccctgttcgcccccgtcacccacgccgagcggatgctcagcctc
gacaacgtgttcagcgaggaggagctcgacgagtgggccgccaaggtcgagcgcgacgcg
gggcgagcctccgtgcgctacctcagcgagctcaagatcgacggtctcgcgatcaacctc
cgctatgaggacggcgtgctcgtcaccgcggccacccgcggcgatggcgtggtcggcgag
gacgtgacgcagaacgtgctgcagatcgagtcgatcccgtcgaggctgcagggcacgggg
catccgcccctcgtcgaggtcaggggcgagatcttcttcccggtcgaggccttcgaggag
ctcaaccgcggtcagatcgaggccggggagcgcgtgttcgccaacccccgcaacgccgcc
agcggatcgctgaggcagaagcgcgagggcaagaacgaccggcagctggcgctcatgcac
gctcggctgtcacggctgcggatgctcgtgcacggcatcggcgcctggccggatccgccg
gtcgcggcgcagtccgaggtgtacgacctcctcaagggatggggtctgccgacgtcgacg
cactaccgggtgttcgacacgatcgacgaggtcgccgggttcatccgctactacggcgag
caccgcgccgccgtcgagcaccagatcgacggcatcgtggtgaaggtcgacgacctcgcg
ctgcacgcggagctcggcgccaccagccgtgccccccgctgggccacggcctacaagtac
cctcccgaggaggtcaacaccaagctcctcgacatcgtcgtctcggtcggccgcacgggg
agggccacgcccttcgccgtgatggagaaggtggaggtggcggggtcggaggtccgccag
gccacgctccacaaccaggacgtcgtgaaggccaagggcgtgctcatcggcgacacggtc
gtgctccgcaaggcgggcgacgtcatcccggaggtgctcggcccggtggtagagctccgc
gacggcaccgagcgggagttcgtgatgcccgagctctgccccgagtgcgggacccggctc
gcccccgccaaggagggcgacatcgacctccgctgcccgaactcgcggagctgccccgcg
caggtgcgcgggcgggtcgagcacgcgggctcgcgcggcgcgctcgacatcgaggggctc
ggcgaggtctccgcggccgcgctgacgcagccgatcgagccggccaccccgccgctcgtc
accgaggcgggcctgttctcgctcaccatgagcgacctcttccccatccgtgcggtcgtc
cgcgacaacgagaccggtctcgagaagctcaccgagtccggtgacccgaagctcgtcacc
ccgttccgtcggcgccggacgaagaaggatccggccttcgacgagatggccgtgccgggc
tcgcccgagttctggggcgacgcccagtccgtgccctcgtcggcggccgtcgagctgctg
gccaacatcgaggccgcgaagaccaagccgctgtggcgcatcctcgtcgccctcagcatc
cggcacgtcggccctgtggcggcgcgggcgctcgccgactggttcggctccctcgacgcc
atccgctccgccacccgcgacgagctcgccgccgtcgagggcgtgggcggcatcatcgcc
gacgcgctgatcgactggttcacggtcgactggcacgtcgagatcctcgaccgctgggcg
gccgcgggcgtgcagttcgccacgcccgggcatccgggtccgggggcttcggtgggcgcg
ggcggcgtgctcgaggggctcaccgtggtcgccacgggatcgctcgagggctacacgcgc
gaaggggctcaggaggcgatcatcaacgcgggcggcaaggcggcgtcgagcgtgagcaag
aagaccgacttcgtggccgccggcccgggggccggctccaagctcaccaaggcggagcag
ctgggcctgcgcatcctcgacgcggccgagttccacctcctcgtcacccagggcccggat
gcgctcgccccggccggcgatcccgccgacgacgcggccggcgaggcccacgaggaggct
ccggcacaggaggacgacgggcccgccgagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (50)   

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