KEGG   Chrysemys picta (western painted turtle): 101937347
Entry
101937347         CDS       T04662                                 
Name
(RefSeq) collagen alpha-6(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
cpic  Chrysemys picta (western painted turtle)
Pathway
cpic04510  Focal adhesion
cpic04512  ECM-receptor interaction
cpic04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cpic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101937347
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101937347
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101937347
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpic04147]
    101937347
   00536 Glycosaminoglycan binding proteins [BR:cpic00536]
    101937347
Exosome [BR:cpic04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   101937347
Glycosaminoglycan binding proteins [BR:cpic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101937347
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   101937347
SSDB
Motif
Pfam: VWA VWA_2 VWA_CoxE Radical_SAM Sec23_trunk Collagen HpcH_HpaI
Other DBs
NCBI-GeneID: 101937347
NCBI-ProteinID: XP_023969954
Position
Unknown
AA seq 1456 aa
FVIFHDNKISLKYKREFLGLEGYFSAFGHFISGYLWINSSVKHCLYHQSIVEIKGKKYVI
TFNFLIFAAPTSADIVLLVDSSNSLGNKAFPSMKSFISKMISHLTATPNQYRIALAQYSD
DLHVEFQLDVYKAKNPMLNYVKKNVVFKGGSVKTGNALREVHKTFFKGPASGRDKERILV
VLTSGASEDAVVEPAKILKSDGVKIIAMGIQDVSPQELQSMATPQFSYKFRTVRDLSMSS
QNLTKIIEDVIQTDINGIIPTVCKSDSVADIVFIIEEGVSKPKAEDIKKFLQDTVSFLDV
RKNCTKIGLVTYSSEPHVLSLLSEETNKTAILQKIQDFSPREGKANTGAAIKVTRQRVFS
GSRKAQGIEQIAILITHRPSEDNVSEAAHDLRRTGVTVFTIGIENADYTQLTQIASYPQP
QYVTNLTAFSDLPKKARTLQKKLLNQIQDKLYVQSERKELLKAGCVDTEEADIYVLIDGS
TSIDAAPFGDIKKFLKEVIKMFNIGPNKVRFGAVQFSHLKRLEFEIDEYSKTNDLEMAFD
NIRQISGNTRIGEALTFMQPLFKKARERRPGRVPCYLIVLTDGESQDSVKEPAERLRNEK
VNIYAIGVKGANEAQLHEIAGSKSRTFFVQEFDFLKNIKNEIVQKICSKEACKEMTADIM
FLVDSSGSIGPENFLKMKIFMRELVNKSDISADRVQVGVVQFSGTQHEEFQLDRYSSKSD
IFSAIDKMSLIGENTLTGGALTFVSDYFKPPKGARPAVKKFLILITDGEAQDEVKSPATA
LRDQGVIIYSVGVFNANKPQLEEISGKPELVFYVEEFDILKHIEDEIIFGICRPHEEKCK
RIERLDVVFVIDGSGSISREQYQTMQDFMTDLVKKSDVAPDRVQFGAVKYSDEPETFFYL
NTNRTKSEIVEAIQNDSTIGGSTYTAKAIGYSEALFAQEHGGRKSKGVPQILIVITDGES
HDATQLGDTAKRLRDKGIIIYAVGIKGAKPDELLAMAGSEDKYYYVDTFEGLKNTSIAIS
EKICDDSKPECEIQADLVFLIDGSNSIKPDDFTRMKDFLQVILDQIDYDRNVQIGIAQYS
DDYKREFSLGAFQNKSELNIQIQNIKQMTGTSTLIGVALKRVKEFFAPARSRRVTRNVQP
VLLVVTDGESHDDVAEPAEDLRKEGVNIYAIGVGDINHMQLMQIAGIPERKYTVNDFNEL
KIIKKRLVGDLCKRDVPTTCFVDIVMGFDISSQKRDDSLFHGQYQLKESLPDILKALTSL
SSLSCNVGTKTQSTVAVYLNNTVTPMFQFESEKIWKNLSKIPIDKPSRLNGNFLESLWKT
FPSKPDDQNRRKVLLVFSDGLDEDVEELEQKSEELRKKGLDALITVVLEGASKFDELQYI
EFGKGFDYTTQLTIGMRNIAKALSKYVTNVAERTCCAVFCKCIGEEGGIGPRGNEGNEGP
KGIKGSRGHLGEEGEP
NT seq 4368 nt   +upstreamnt  +downstreamnt
tttgtaatctttcatgataataaaataagcttaaaatataagagagaattcttgggctta
gaaggatatttttcagcttttggacattttatttctggatatctctggataaattcttct
gtgaagcattgcttgtatcatcagagtattgtagagataaagggtaagaaatatgtaata
acatttaactttctgatttttgcagcccctacatctgcagatattgtccttttggttgac
agctctaatagcctgggaaacaaggcgttcccctctatgaagtcttttattagcaaaatg
atcagtcatttaacagcgactcctaaccaataccgtatcgcgcttgcccagtacagtgat
gatttgcacgttgaatttcagctggacgtctataaagcaaagaacccaatgctgaattat
gtaaaaaaaaatgttgtattcaagggtggttcagtaaaaactggcaatgcccttcgagaa
gttcacaaaacctttttcaaaggaccagctagtggaagagacaaagaacgaattctggta
gtcttgacttcaggggcatcagaggatgctgtagtagagcctgccaagatcttgaaaagt
gatggggtaaaaatcatagccatggggattcaggatgtttctcctcaagaattgcagtca
atggctacacctcaattttcttataagtttcgcacagtgagggatctcagtatgtcttct
caaaacctgaccaagatcatcgaggatgttattcaaacagatattaatggcataatacca
acagtttgtaagagtgattccgttgctgatattgtgttcataatagaagagggtgtttca
aaaccaaaagctgaagatattaaaaagttcctgcaagatacagtttcctttcttgatgtg
aggaagaattgtacaaagattggcctagtgacatacagcagtgagccacatgttttatct
ttattgagcgaagaaacaaacaaaactgctattctgcagaaaatacaggacttttctcca
agggaagggaaggccaacaccggtgctgccattaaggttacaaggcaaagagtcttctct
ggaagcagaaaggcccaagggatagagcaaatagccattctgatcacgcacagaccctct
gaagacaacgtaagtgaggcagctcatgatcttcggagaactggcgtgactgtattcacc
ataggcattgaaaatgctgattacacgcagttaacccagatagcatcatatcctcaaccg
caatatgttactaacctgacggcattttctgacctgccaaaaaaagccagaactttacaa
aagaaactcttgaatcaaattcaggacaagctgtatgtccagtctgaaagaaaagaacta
cttaaagcaggatgtgtggacacagaggaagctgatatttatgtcctcattgatggctca
acaagcattgatgctgctcccttcggagacatcaaaaaatttttgaaggaagtgattaag
atgtttaacatagggccaaataaagttcgctttggagctgtgcagttctcacatctcaaa
agactggagtttgaaattgatgaatacagcaaaacaaatgatttagagatggcctttgac
aacattaggcaaatatctgggaatacccgtattggagaagctttgactttcatgcagcca
ctgtttaaaaaggcaagggagcggagacctggcagggtgccttgttacctcattgtccta
acagatggggagtcacaggacagtgtgaaggagcctgctgagagactgaggaatgagaag
gttaatatttatgccattggtgtaaaaggtgcaaatgaagcacagctccatgagattgca
gggtcaaagagcaggactttctttgtgcaagagtttgacttcttgaaaaacataaaaaat
gaaattgttcaaaagatctgttctaaagaagcctgcaaagaaatgacagctgacatcatg
tttctagtggacagttctggaagcataggaccagagaactttttgaaaatgaaaatcttt
atgagagaactggtgaacaaatctgacatcagcgcagaccgagtgcaggttggggtcgtc
cagttcagtggcacacaacacgaagagttccagcttgaccgatactcttcaaaaagtgac
attttcagtgctattgataagatgtctcttataggggaaaatacactaacaggaggcgca
ttgacatttgtgtctgattatttcaagcctcccaaaggtgcacgtccagctgtcaaaaag
tttcttatcctgattacagatggggaagcacaggatgaagtaaaaagtccagcaacagcc
ttacgtgatcaaggtgttatcatctactctgttggggtgtttaatgcaaataaacctcag
ctggaagagattagtgggaagcctgagctggttttttatgtcgaggagtttgatattctg
aagcacatagaagatgagatcatctttggaatatgcaggcctcatgaggaaaaatgcaag
aggatagaaagattagatgttgtgtttgtgatagatggatctgggagcataagtcgcgaa
caatatcagaccatgcaagacttcatgactgacttggtgaaaaaatctgatgtcgctcca
gatagagttcagtttggagctgtaaaatattctgatgaaccggaaacgtttttctacctt
aatacgaacagaacaaaatccgagattgttgaggctatccagaatgatagcactatagga
ggttcaacgtacacagccaaggcaattggctattcggaagctctgtttgctcaggagcat
ggcggccgcaaaagcaagggagttccacagattcttatagtgataacagacggtgagtcc
catgatgcaacacagctcggtgacacagccaagagattaagagacaagggaattattatc
tatgctgttgggataaaaggagcaaaacctgatgagcttttggccatggctggatcagaa
gacaaatattactatgtggatacatttgaaggactcaaaaacacatctatagcaatatca
gaaaaaatatgtgatgattcaaaaccagagtgtgaaattcaagcagaccttgttttcttg
attgacggttccaatagtataaagccagatgacttcaccaggatgaaggatttcttgcaa
gttatactagatcagattgattatgatcgcaatgttcaaattggcattgcccagtacagt
gacgactataaaagagaattcagcctgggtgcttttcagaacaaatcagaactgaacatt
caaattcagaacattaaacagatgacaggaactagtactttaattggagttgcacttaag
cgggtgaaggaattctttgcaccagcacgcagcagaagagtaacaagaaacgtccaacca
gttttgctggttgtcactgatggggagtcgcatgatgatgttgctgaaccagcagaagat
ctgagaaaggaaggtgttaatatatatgctataggagttggggatatcaatcacatgcag
ctcatgcaaatagctggcatcccggaaaggaagtacactgttaatgatttcaatgagctg
aagattattaaaaaaagactagttggtgacctatgcaaacgtgatgttcctacaacttgt
tttgtggatattgttatgggatttgacatctcttcacaaaagagagatgacagtttattc
catggacagtaccagctgaaagaatctcttcctgacattctaaaagccctcacatcccta
agcagtctgagttgcaatgtggggacaaagacacagagcaccgtggcagtttacctgaac
aacaccgttacacccatgttccaatttgaaagtgagaaaatatggaaaaacctgagcaag
atcccgatcgacaaaccatctcgtctcaatggcaatttcctggagtcactctggaaaacg
tttcctagcaaacctgatgatcaaaatcgaaggaaggttttacttgtattttcagatggt
ttggatgaagatgtagaagaacttgaacaaaagtcagaagaactcagaaaaaaaggattg
gatgcactgataaccgttgttctggaaggagcctctaaatttgatgagcttcagtacatt
gagtttggaaagggattcgactacacgactcaattaactattggcatgagaaatatcgcc
aaagcactgtccaagtatgtgactaacgttgctgaaaggacgtgctgtgctgttttttgc
aagtgcattggggaggaaggtggaattggaccccgagggaatgaaggaaatgaaggacct
aaaggtataaaaggcagtcgaggacacttaggagaagagggagagccg

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (58)   

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