KEGG   Chrysemys picta (western painted turtle): 101941489
Entry
101941489         CDS       T04662                                 
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
cpic  Chrysemys picta (western painted turtle)
Pathway
cpic03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cpic00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    101941489 (KDM2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cpic03000]
    101941489 (KDM2B)
   04121 Ubiquitin system [BR:cpic04121]
    101941489 (KDM2B)
   03036 Chromosome and associated proteins [BR:cpic03036]
    101941489 (KDM2B)
Enzymes [BR:cpic01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     101941489 (KDM2B)
Transcription factors [BR:cpic03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    101941489 (KDM2B)
Ubiquitin system [BR:cpic04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     101941489 (KDM2B)
Chromosome and associated proteins [BR:cpic03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    101941489 (KDM2B)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     101941489 (KDM2B)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box JmjC Cupin_8 LRR_4
Other DBs
NCBI-GeneID: 101941489
NCBI-ProteinID: XP_005298703
UniProt: A0A8C3IQG5
Position
17:7201428..7363221
AA seq 1268 aa
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVCIRSFNLEEKLKSQKYHGNFVR
DMEGKDLTFEYVQREALRVPLLFRSKDGLGIKMPDRDFTVRDVKLLVGSRRIVDVMDVNT
QKGIEMSMSQFVRYYETPEAERKKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVELCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRVYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDATRKPSVDSFSSDSWLDMDEESCDAHTREEKEDNLDKNTKSLADGSSSPNSTH
SEGKDVAGKKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVA
WPKKTTKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDVAKRKGECEETPRRKSDEHSKKNPVDSILRRKSDDAHMRRKRKFEK
PQEPAMRKRLKLGKEEKLFRKKRRSWKATDDRPAMAKPLRRFKQEPEEDLPEAPPKSKES
DQSRSSSPTAGPSTESAEPRDKKKIKMRRKRRLPNKELSKELSKELNQEIQKTENSLANE
NHQPIKSEPESENEEPKRALSNSERLHRFSKGLNGTPRELRHQLVPSLRSTPRVITRPPP
SLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHSDLCICMRV
CKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRL
PGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQIDN
RSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVSDQSINLLTAVGTTTRD
SLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQME
EKLLQKLS
NT seq 3807 nt   +upstreamnt  +downstreamnt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgatctatt
ggtagaaggagatacgatgagaatgaggacctctcggacgtggaggaaattgtctgcatc
aggagttttaatttggaggagaaattaaagagtcaaaagtatcatgggaatttcgtgcgt
gacatggaagggaaagatcttacttttgagtatgtgcaaagagaagctctcagggttccc
cttctcttcagaagtaaagatggactgggaattaaaatgccagaccgggatttcactgtc
agagatgtgaagctattagtgggaagccgtcggattgtggatgtgatggatgtgaacacg
caaaagggcattgagatgagcatgtctcagtttgtgagatactatgaaacaccagaggct
gaacgtaagaagctctacaatgtcatcagcctggagttcagtcatacaaagctggagaac
attgtcaagcgccccaatgtggtggacttagtcgattgggtggataatatgtggccgcag
catttgaaggagaggcagacagatgccacgaatgctatttcggagatgaagtacccaaaa
gtgaaaaagtactgtttgatgagcgtgaaaggatgcttcactgattttcacattgatttt
ggtggcacttcagtgtggtatcacgttttccgaggagggaagatcttctggctgattccg
cctactctgcagaatctggaactttatgaagaatgggttctgtcaggaaagcaaagtgat
atctttctgggagacagggtggaactatgccaaagaattgagttgaaacaaggctatacg
ttttttattccttcaggatggatacatgcagtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcgtctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagaataccag
aaagaatcaatgttaattgatgccacaagaaaacccagcgtagacagcttctcatcagat
tcctggttagacatggatgaagaatcttgtgatgctcatacccgggaggagaaggaagac
aatttggataagaacacaaagtccttggctgatggttcctcctcgcccaacagcacacac
tctgaagggaaggatgttgcagggaaaaaacagaaagccacagtgatgaggtacctcaaa
agaactttgtccaatgagtcagatgacagtgtaaagtcaacaacccccacggactatccc
aaaacaccaacagggtcgccagctaccgaagtctcaaccaaatggactcatctcacagag
tttgaactgaaaggtttgaaagccctagtagaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaggatcctcaggcacttctggaggatatgaagaacatt
ctgaaggaacatgctgatgacgaccagaatcttgccatttcgggggtccctgtggtagcc
tggcctaagaagaccacaaagaacagggcagttggacgacccaaagggaaactgggcact
gcctctgcagtgaagctagctgctaatcggacgactgcaggagcgcgccggagaaggacg
cgatgccgcaagtgcgaggcttgtctacgtacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaagtttggtgggcctggaaggatgaagcagtcctgcattatgaggcagtgc
atcgcaccagtgctgcctcacactgctgtgtgtctcgtgtgcggagaagctgggaaggag
gacactgtggaagaggaggagggcaagtttaatctcatgctaatggaatgttccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gaactgccgaactgctgggaatgtccaaagtgcaaccatgcagggaaaactgggaaagcg
tacaagcaaaagcgtggaccaggattcaaatatgcgtcgaatctcccaggctcactgctt
aaggaacagaagatgaacagagataataaggaagtaacagatgtagcaaaacggaaaggg
gaatgtgaagaaacccccaggcggaaatctgatgaacattccaaaaaaaaccctgttgat
tctattttgaggagaaagtcagatgatgcgcatatgcgaaggaaaagaaaatttgagaaa
ccccaagaacctgctatgagaaaacggctaaaacttggtaaagaagagaaactcttcagg
aaaaagaggcgatcatggaaggctacagatgaccgacctgccatggccaaacccctgcgg
cgttttaaacaggaacccgaggaggatctgccagaagcacctccaaagtccaaggagagt
gaccagtcacggtcaagctctcccactgcgggccccagcaccgaaagtgctgagcccagg
gacaagaagaagataaagatgaggcggaaaaggcggcttccaaataaggaactgagcaaa
gagctcagcaaggagctcaatcaggagatccaaaaaaccgagaacagccttgccaatgag
aaccaccaacccatcaaatctgagccagagagcgagaatgaggagcccaaacgtgctctg
agcaatagcgagagactccacaggttcagcaaagggttaaatgggactcctagggagctg
aggcaccaacttgtgccaagcctgcgaagcacacctagggtgattacccggccaccacct
tcgctctctcctcccaaatgcattcagatggaacgccatgtaatcaggccaccccccatc
agccctcctccggactcactccccctagatgacggggcagcccatgtgatgcaaagggaa
gtctggatggctgtctttagctacctcagtcatagcgacttgtgcatctgtatgagagtt
tgtaagacctggaacagatggtgctgtgataaaagattgtggaccaaaatagatctaaac
cattgtaaatccatcactccacttatgctcagtggcattatcaggagacaacctgtaacc
cttgatcttagctggacaaacatatctaaaaaacagctgagctggctcatcaacagactc
ccaggtctacgagacctgctgttatcaggatgttcatggatagccgtctcagcactttgt
agttccagttgtcctttactccgaaccctggatgttcagtgggtggaaggattaaaagat
gcacaaatgagagacctcttgtcaccaccaacagataacaggccaggtcaaattgacaac
cgaagtaaactacggaacatagttgagctgcgtttggctggtctggatattacagatgct
tctttacgattgatcattaggcacatgcctctgctttccaaactcaatcttagttactgt
aaccatgtgtcagatcagtctattaacctgctgactgcagtaggaaccaccacgcgtgat
tccttaactgaaattaatttatcagattgcaataaggttactgaccagtgcctgtcctac
tttaaacgttgtggaaacatctgtcagattgacttgaggtactgcaagcaagtgacaaag
gaaggctgtgagcagttcatagcagagatgtccgtgagtgttcagtttggtcagatggaa
gagaaacttcttcaaaaactgagttag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (8)   
   Pfam (8)   
All databases (52)   

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