KEGG   Clostridium perfringens SM101: CPR_1718
Entry
CPR_1718          CDS       T00379                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
cpr  Clostridium perfringens SM101
Pathway
cpr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CPR_1718 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpr03021]
    CPR_1718 (rpoZ)
   03400 DNA repair and recombination proteins [BR:cpr03400]
    CPR_1718 (rpoZ)
Enzymes [BR:cpr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CPR_1718 (rpoZ)
Transcription machinery [BR:cpr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CPR_1718 (rpoZ)
DNA repair and recombination proteins [BR:cpr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CPR_1718 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: ABG86929
UniProt: Q0SS74
Position
complement(1914404..1914616)
AA seq 70 aa
MNNSMINPSIVDLLKRVEDRYSLVILSAKRARQIIDGAETFVDVESNKPLTIAINEIDEG
FVNYKDTEEK
NT seq 213 nt   +upstreamnt  +downstreamnt
atgaacaactctatgattaatccatcaatcgttgatttattaaaaagggtagaagataga
tattctttagtaatattaagtgctaagagagcaagacaaataattgacggagcagaaact
tttgttgatgttgagtcaaataagccattaacaatagctataaatgaaatagatgaagga
tttgtaaattacaaagacactgaggagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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