KEGG T04306: CPter91

Collimonas pratensis: CPter91_0056

Entry

CPter91_0056      CDS       T04306

Name

(GenBank) hypothetical protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

cpra Collimonas pratensis

Brite

KEGG Orthology (KO) [BR:cpra00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cpra03016]
    CPter91_0056
Enzymes [BR:cpra01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     CPter91_0056
Transfer RNA biogenesis [BR:cpra03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    CPter91_0056
Prokaryotic type
   tRNA splicing ligases
    CPter91_0056

SSDB

Motif

Pfam:

RtcB DUF4514

Other DBs

NCBI-ProteinID:

AMP02455

UniProt:

A0A127PXY0

Position

complement(53382..54617)

AA seq 411 aa
MKHEEYDVMNVEGGSHVKMWTRGVPVEAEARKQLSNTAKMPFIYKHLAVMPDVHVGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLNARDLPDNLGPLRSAIEKAIPHGMSPKTR
GFKGRDKGSWETPPTPVDAAWAQLKDGFDAVCLKTPKLKNTNNYRHLGTLGSGNHFVEVC
LDESNAVWFMLHSGSRGVGNAIGSHFIELAKQDMRTHFINLPDQDLAYLPEGTQHYDDYV
EAVSWAQKFARMNREVMMQNLIAAVRTVISKPFETHVEAVNCHHNYVQKENHFGKDVLVT
RKGAVSARAGELGIIPGSMGAKSFIVRGKGDADSFHSCSHGAGRTMSRTEAKRRFTLDDQ
IKATQGVECRKDADVIDEIPMAYKDIDAVMEAQRTLVEVVHTLKQVVCVKG

NT seq 1236 nt +upstreamnt +downstreamnt
atgaagcacgaagaatacgatgtaatgaatgttgaaggcggaagccacgtcaagatgtgg
acccgcggcgtaccggtggaagccgaagcgcgcaagcagctgagcaacaccgcgaagatg
ccctttatctataagcatctggccgtgatgcctgacgtacacgtcggcaaaggatcgacc
atcggcagcgtgattcctacgctgggagcggtgattcctgccgcggtgggggtcgatatc
ggctgcggcatgatggcagccaagaccaccttgaacgcgcgcgacctgccggataatctc
ggccctttgcgcagcgccatcgaaaaggccattccgcacgggatgtcaccgaagacgcgc
ggtttcaagggccgtgataaaggttcatgggaaaccccgccgacaccggtggacgccgcc
tgggcgcagctgaaggatggattcgatgcagtttgcctgaagacgccaaagttgaagaac
acgaataactatcggcacctgggaacgctgggatccggtaaccacttcgttgaagtctgt
ctggatgaaagcaatgctgtctggttcatgctgcactcgggttcgcgtggcgtcggtaac
gccatcggctcgcatttcatcgaactggccaagcaggatatgcgcacccatttcatcaac
ttgccggaccaggatctggcctacctgccggagggtacgcaacattacgacgactatgtc
gaagcagtgagctgggcgcagaagtttgcacgcatgaatcgggaagtgatgatgcaaaat
ctgattgcagcggtgcggacggtgatcagcaaacctttcgagacgcatgtggaagccgtg
aattgccaccataactatgtgcagaaagagaatcacttcggtaaggatgtgctggtaacc
cgtaagggcgcggtttcggcacgggcgggcgaactggggatcattccgggttcgatggga
gcgaaaagcttcatcgtccgcggtaaaggcgatgccgacagtttccatagctgcagccac
ggcgccggacgcaccatgagccggaccgaagccaagcggcgtttcacgctggacgaccag
atcaaggcgacgcagggcgtggaatgccgcaaggatgccgacgtcatcgatgaaattccg
atggcttacaaggatatcgatgcggtgatggaagcccagcgcaccctggtggaagtggtg
cataccctgaagcaggttgtgtgcgtgaaaggctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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