KEGG   Colwellia psychrerythraea: CPS_0188
Entry
CPS_0188          CDS       T00258                                 
Name
(RefSeq) putative helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
cps  Colwellia psychrerythraea
Pathway
cps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CPS_0188
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cps03400]
    CPS_0188
Enzymes [BR:cps01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CPS_0188
DNA repair and recombination proteins [BR:cps03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CPS_0188
SSDB
Motif
Pfam: AAA_30 AAA_19 UvrD_C_2 Viral_helicase1 AAA_11 AAA_22 Helicase_RecD HHH_4 PhoH SLFN-g3_helicase UvrD-helicase T2SSE AAA_16 ABC_tran NTPase_1 SH3_13 TrwB_AAD_bind RsgA_GTPase AAA_29
Other DBs
NCBI-ProteinID: AAZ26895
UniProt: Q48AF7
Position
200194..202560
AA seq 788 aa
MNAIPNVTIRVTKVLATYNSGKMRFSGVPVCPNTHQKLSKRDFYLITATPEQAVFEPEIG
QVWKINGEAYTEEKPSYKKHGVDLFHEIRRAKQCVCVLPKTEDAFIAFIKEIAAFKGVGA
KWAKKLWTEFKLETLKHMEHRRAATLETVVTPNIAKSLINGYSKYRNLKYATWLTSKEIP
IKIQKMIFEFQPISNEIRIHQSGYKYAIDPRTIIEENPYILASSFSMGFFDVDKLVRRKF
EPNILSEDPRRMIAAVSEAIRLCVKGDYETGGHTTVPYKKLLKALTEILQETEQLASIDK
SYTKPLFTMEELAITALQAHQKDAYVIYPDGQYQLTPTYLMENVIALRMLNMKSQIVTFG
EEESEACKKAFDLSPFPLLSKQKEAVFTAIESSISAIIGGAGTGKTTVLHAVLTAFEALG
YVSDASLCPDKTTTNHNIKTMALSCRAAKRMRDCINKSSDGSRRERQISATSIAQFIHQT
VIEDAEGKYLVVIDEASMLDVATMYNIITNIHPNVRILLVGDHYQLPPIGGGNVLADVVN
SGVIPTVELDIVKRQKGNSGIPEYSKFVREGTVPPKLSSGAVYFHEVESDFIADKCASLF
ALSPLDSMVVGSTNAVVKEVNKFCQDEVNPDGERYAEGKHSDFIKIVLGGLRQGDSVLFK
ENISLDVTNGSLGKLVSVECKKDTFGLVVMDDDDIEVRLEEEIMPALMLGYSMTVHKAQG
SQFPIVIIALAGGYIDRSWLYTAITRAECELHIVSTKKKLLTAINKPPSALGRRTRLKML
LQEGADQI
NT seq 2367 nt   +upstreamnt  +downstreamnt
atgaacgcaataccaaatgtaaccattagggtaaccaaagtcctggctacctacaatagc
ggtaaaatgcgcttcagcggagtgcccgtttgtcccaatacgcatcaaaaactcagtaaa
cgtgacttttacctcataacagccacaccagaacaagctgtatttgaaccagaaattggg
caagtttggaaaattaatggagaagcatacacagaagaaaaaccaagttataaaaagcat
ggagtagacctttttcacgaaataagaagagcaaaacaatgtgtttgtgtgttgcctaaa
acagaagatgcttttattgcattcattaaagaaatagctgcattcaaaggagtgggggca
aagtgggctaaaaagctatggactgaatttaagcttgaaactcttaaacacatggagcat
agacgcgctgctacccttgaaactgttgtaaccccaaatattgcgaaatcgctaattaat
ggctattcaaagtacagaaatttaaaatacgcaacatggctaacgtctaaagaaatcccc
attaaaattcaaaagatgattttcgaattccagccgatttcaaatgaaataagaatccac
caaagcggctataaatacgcaattgaccctcgcactataattgaagaaaatccgtatatt
ctagctagctctttttccatgggattttttgacgttgataagttagtgcgccgaaagttt
gaaccaaacatactctcggaagaccctagaagaatgattgcagctgtgagcgaagctatc
cgattatgtgtaaaaggagattatgaaacaggaggccatacaaccgttccatacaaaaaa
ctactgaaagcattgacagaaattctacaagaaacagagcaacttgcttcgattgataag
tcatacaccaagccattattcacgatggaagagctagctattactgcgctccaggcacat
cagaaagatgcttatgttatctaccctgacggtcagtatcagcttactccaacctactta
atggagaatgtcattgcgctgcgcatgctgaacatgaagtcacaaatagtgacctttggt
gaagaagaaagtgaggcatgtaaaaaagcattcgatctttcacctttcccattgctgtct
aagcaaaaagaagcggtatttaccgctattgaaagcagtatcagcgcaatcattgggggc
gcaggcacaggtaaaactaccgttctacatgccgttttaactgcatttgaggcgcttggg
tatgtctcagatgccagcttatgcccagataaaacgacgaccaatcacaacataaaaaca
atggctttaagttgtcgcgcagctaaacgtatgcgcgactgcatcaataaatcaagcgat
ggttctaggcgagagcgacaaataagcgcaaccagtattgcccaatttatacatcaaact
gtcattgaagacgcagaaggtaaataccttgtagtcattgatgaagcaagcatgttggat
gttgcaacaatgtataacatcatcacaaatatccacccaaacgtgcgaattttattagtt
ggagaccattatcaattacctccaattggtggtggaaacgttttggcagacgtggttaat
tcgggggttatccctaccgtagagcttgatattgtcaaacgacaaaaagggaactcggga
atcccagaatattctaaatttgtgcgagaagggactgtaccacctaaattgtcaagtggc
gcagtctactttcatgaggttgagagcgattttatagctgacaaatgcgcaagcttgttt
gccctttcgcccttggatagcatggttgttggctctaccaatgccgtggtaaaagaagtg
aataagttttgccaagacgaggtaaatcctgatggagaacgctatgcagaaggtaaacac
tccgatttcataaagattgtacttggggggctacgccaaggtgactctgttttgtttaaa
gagaacatttcgctcgatgtgacgaacggctccttaggtaaattagtctcagtcgaatgt
aaaaaagacacttttggccttgtggtaatggatgatgatgacattgaagttcgcctagaa
gaagaaataatgccagcacttatgcttggatacagtatgaccgttcacaaagcgcaaggg
tctcaattcccaattgtcatcatcgccttggcagggggttatatagatagatcatggctc
tacactgcaataactcgtgccgaatgtgagctacacatagtgagtacaaaaaagaaatta
ctgacagcaattaataaaccaccaagtgctttgggtcgaagaacaaggttaaaaatgttg
ctacaagaaggggcagatcaaatttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (50)   

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