KEGG C.psychrerythraea: CPS

Colwellia psychrerythraea: CPS_2477

Entry

CPS_2477 CDS C.psychrerythraea

Gene name glyA

Definition serine hydroxymethyltransferase (EC:2.1.2.1)

Orthology K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]

Pathway cps00260 Glycine, serine and threonine metabolism
cps00460 Cyanoamino acid metabolism
cps00670 One carbon pool by folate
cps00680 Methane metabolism
cps01100 Metabolic pathways

Class Metabolism; Energy Metabolism; Methane metabolism [PATH:cps00680]
Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:cps00260]
Metabolism; Metabolism of Other Amino Acids; Cyanoamino acid
metabolism [PATH:cps00460]
Metabolism; Metabolism of Cofactors and Vitamins; One carbon pool by
folate [PATH:cps00670]

SSDB

Motif Pfam: SHMT Aminotran_1_2 Beta_elim_lyase Cys_Met_Meta_PP OKR_DC_1
DegT_DnrJ_EryC1 Pyridoxal_deC Glyco_hydro_77
PROSITE: SHMT

Other DBs NCBI-GI: 71279550
NCBI-GeneID: 3520009
JCVI-CMR: CPS_2477
UniProt: Q481S6

Position 2594017..2595270

AA seq 417 aa
MFYKNDQIAGFDDSIWQAMEQEDKRQQDHVELIASENYTSARVMQAQGSQLTNKYAEGYP
GKRYYGGCEHVDVIEQLAIDRAKELFGADYANVQPHSGSQANAAVFMALLKPGETVLGMS
LAHGGHLTHGSKVSFSGKIYNAVQYGLNEATGEIDYEEVERLAKEHQPKMIIAGFSAYSR
VVDWQRFRDIADSIGAWLFVDMAHVAGLVAAGLYPNPVPIADVVTTTTHKTLRGPRGGLI
LAKQNDELAKKLNSAVFPAGQGGPLMHVIAAKAICFKEALGEGYVEYQQQVIDNAREMAK
TFQTRGYNVVSGGTDNHLFLLDLIDKGITGKDADAALGRANITVNKNSVPNDPQSPFVTS
GLRIGTPAITSRGFGLEEAAALTGWICDVLDDISNEQVIDDVRSKVLDLCEKNPVYR

NT seq 1254 nt +upstreamnt +downstreamnt
atgttttacaaaaatgatcaaatagccggtttcgatgacagtatttggcaagccatggag
caagaagacaaacgtcaacaagatcacgttgaattaattgcctcagaaaactataccagt
gcgcgcgtgatgcaagcccaaggcagtcaactgaccaacaaatacgccgaaggttatcct
ggtaaacgttattacggcggctgtgaacacgttgatgtgattgagcaactggcgattgat
cgtgcaaaagaattgttcggcgctgattacgccaatgtacaaccccattctggctcacaa
gccaatgccgcagtatttatggccttgcttaagcccggtgaaacggtgctcggcatgagc
ttagcgcacggtggtcatttaacccacggctctaaagtaagcttctctggtaaaatttat
aacgcagtgcaatacggcttaaatgaagcaaccggtgaaattgactacgaagaagtcgag
cgtcttgcaaaagagcatcaaccgaaaatgattattgccggtttctcagcgtattcacgt
gtggttgattggcagcgttttcgtgacattgccgatagcattggcgcgtggttatttgtc
gatatggcgcacgtagctggtttagtggcggcaggtctttatcctaacccggtaccgatt
gcggatgtggtgactaccactacccataaaaccttacgtggtcctcgtggcggtttgatt
ttagcgaaacaaaatgacgaactggctaagaaattaaattcagcggtattccctgccggt
caaggtggcccgttgatgcatgttatcgcggccaaagcgatttgtttcaaagaagcactt
ggcgagggttatgttgagtatcagcaacaggttatcgataacgcccgtgaaatggcaaaa
acattccaaacccgtggttataacgtagtttctggcggtacggacaatcatttattttta
ttggatttaatcgataaaggtattaccggtaaagacgccgatgctgcgcttggccgcgct
aatatcacggtcaataaaaactccgtgcctaacgacccacaatcaccatttgtcaccagt
ggtctgcgtatcggcacaccagccatcaccagtcgtggttttggacttgaggaagcagca
gcattaacgggttggatttgtgatgtgttagatgacattagcaatgagcaagtgattgat
gacgtgcgaagtaaagtgttggacttatgtgaaaaaaatccggtctaccgctag

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (8)   
   PROSITE (1)   
All databases (25)

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