KEGG   Colwellia psychrerythraea: CPS_4094
Entry
CPS_4094          CDS       T00258                                 
Symbol
recJ
Name
(RefSeq) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cps  Colwellia psychrerythraea
Pathway
cps03410  Base excision repair
cps03430  Mismatch repair
cps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CPS_4094 (recJ)
   03430 Mismatch repair
    CPS_4094 (recJ)
   03440 Homologous recombination
    CPS_4094 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cps03400]
    CPS_4094 (recJ)
DNA repair and recombination proteins [BR:cps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     CPS_4094 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     CPS_4094 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CPS_4094 (recJ)
SSDB
Motif
Pfam: RecJ_OB DHHA1 DHH N_Asn_amidohyd
Other DBs
NCBI-ProteinID: AAZ27994
UniProt: Q47WS3
Position
complement(4308214..4309968)
AA seq 584 aa
MSKTIVRRVKVATDHLPDNLPEIIKQIYASRGMESAQELELNVAHLQGMVDETALMGMDK
ACQLLHDALVNKLRIVIVGDFDADGATSTALMMTALSLFNSNNHDFIVPNRFEYGYGLTP
EIVDIAAQQNTQMLITVDNGISCIAGVKRAKDLGMQVIVTDHHLPGHSLPIADAIVNPNQ
HGCNFPSKALAGVGVAFYLMLALRKYCREQNYFSEQGIAEPNIAQLLDLVALGTVADVVS
LDANNRILVEQGLKRIRAGKTRPGIQALIEIANKNQQRLVASDFGFALGPRINAAGRLDD
MSYGINCLLATDLSSARVMAAELDDLNKTRREIEQGMQAEAEQVLTSLKFDEDNLPNAIA
LYQQDWHQGVIGIVAGRLKEKFHRPCIVFANGKDDDSVDVSEREIKGSARSIPGLHIRDL
LEHIDSQHPDIILKFGGHAMAAGLSIKHGNFARFQQLFNELAGKWLKEEDLQSIILSDGE
LMLEHLSLDFAEKLRDAGPWGQNFPEPLFDDTFKLVQQRIVGEKHLKIVVEKQGEIFDGI
AFNVDVKTWPNAQVKQVHLAYRLDVNEFRGKRTVQFMVENITAI
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgagtaaaacaattgttcgccgagtgaaagtagctaccgaccatttgcctgataaccta
cctgaaatcataaaacaaatttatgctagccgtggtatggaatctgcacaagagcttgaa
cttaatgttgctcatctacaaggtatggtcgatgaaacagcgcttatgggcatggacaaa
gcttgtcagttattacatgacgcgctagtgaataaattacgtattgttattgttggagat
tttgatgccgacggtgcgactagtactgctttaatgatgactgcattgagcctgtttaac
agtaacaatcatgactttattgtgccaaatcgttttgaatatggctacggcctaacccct
gagattgttgacattgcagcacagcaaaatacgcaaatgttaataacggtggataatggc
atcagttgtattgccggtgttaaacgtgcaaaagatttaggtatgcaggtaattgttacg
gatcatcacttgccaggacattcattacccattgccgacgccattgttaaccctaatcag
catggttgtaactttccgagtaaagctcttgctggcgtgggggtagctttttacttaatg
ctagctttaagaaagtattgccgtgagcaaaactatttttcagagcaaggtattgctgag
cctaatattgctcaactattagatttggttgctttaggtactgtggccgatgtggtttca
ttggatgctaataaccgaattttagtagaacaaggcttgaagcgtattcgtgcagggaaa
actagacctggcattcaagcgcttattgaaattgcgaataaaaatcagcaaaggctcgtt
gccagtgattttggttttgccctcggcccgagaattaatgctgcaggtcggttagatgat
atgtcttatggtattaactgtttacttgctactgatttgtctagtgctcgtgtgatggct
gcagagcttgatgatctcaataaaacacgcagagaaatagagcagggtatgcaagccgaa
gctgagcaagtacttacttctctcaagtttgatgaagataatctacctaatgcgattgcc
ctttatcaacaagactggcatcaaggtgttatcggtattgttgctggcaggttaaaagag
aaatttcatcgtccttgtattgtttttgctaatggcaaagatgatgactcagttgatgtt
tccgagagagaaattaaaggctcggcgcgttctattcctggcctgcatattcgagactta
ttagagcatattgacagtcaacacccagatattattcttaagtttggtggccatgcaatg
gcggcaggtttatctataaaacacggtaactttgcgcgttttcagcaactatttaatgaa
ttagcgggtaaatggttaaaagaagaagatttgcagagtattattttatctgatggcgag
cttatgcttgaacatcttagtttagattttgccgaaaaattgcgagacgctggtccttgg
gggcaaaacttccctgagccattatttgatgacacttttaaattggtacagcagcgtatt
gttggcgaaaagcatcttaaaatagtggtagaaaaacagggagaaatctttgatggtatt
gcttttaatgttgatgttaagacttggccgaacgctcaagtaaaacaggtacatttagct
taccggttagatgttaatgaatttcgtggtaaacgcacggtgcaattcatggttgaaaat
atcacagctatttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (33)   

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