KEGG T00619: Cphy

Clostridium phytofermentans: Cphy_1729

Entry

Cphy_1729 CDS T00619

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

cpy Clostridium phytofermentans

Pathway

cpy03410	Base excision repair
cpy03420	Nucleotide excision repair
cpy03430	Mismatch repair
cpy03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:cpy03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:cpy03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:cpy03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:cpy03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

160879872

NCBI-GeneID:

5741480

UniProt:

A9KS69

Position

2128734..2131175

AA seq 813 aa
MTTKLNEYNQKRNFERTLEPEGKTEDSEESLRFVIQHHMARKEHYDFRLEWNEVLLSWAV
PKGPSFDTHDKRLAVQVEDHPLEYRNFEGTIPKGEYGGGVVMLWDEGFWEPQGNVEEGLR
EGMLKFVLKGKRLKGKWALVRLKAKASEAKDNWLLLKEKDEYVKNTDGISEFITSIRTGR
TMKEIEEGEEEKIMRNPFHMVDAQLAKLVNTVPEGEDWLYELKYDGYRIIAFVEGNSVRL
ITRNGNDYMRRFHDVATSLIDLAAGRAMVLDGEMVVTDPSGKTDFQALQNYMKNPKGQNL
TYIVFDLLALNGADLRGQPLIHRKEMLEALMKDAPKNLYYSRYVRGNGKESFAVACASDM
EGIVGKKADSIYSGTRNGDWIKLKCDKRQEFVIGGYTLSDKKVWGISSLLLGVYEGEELV
FAGRAGTGLSESDMKTLEEKFENIKRMAPVFKTAPSPKSNEKITWLEPKLVAEIKFAEWT
KDNLLRQASFKGIRTDKDPMDIKREKPEEEIQSQSSEKEVEKPMGVNANSIIIEGIKISN
PDKVMFDDPVITKLDVVQYYEKVSELMLPYVSHRVLSIVRCPKGVSQTCFYKKHPGAGSK
GIITIPITTSSGETEDYFYIENISGLISEVQMGTLEFHTWGSRIDELEKPDVMVFDLDPD
EGMDLSQVRQGVLDVRSILNELCLNSYLKTSGGKGYHVVVPLKPVVNWNVFNDFARRVAE
VMEKKWPDRYTSNVRKAKRTDKIFIDWIRNGRGATSVAPYSVRARKGARVSMPIAWEELD
TVAPDGITMADALLRLNGKDPWKDFFQNNQMLK

NT seq 2442 nt +upstreamnt +downstreamnt
atgactacaaaactaaatgagtacaaccaaaaaaggaactttgaaagaaccttagagccg
gaaggaaaaacagaagattctgaagaaagtctaagatttgtcatccagcaccatatggcc
cgtaaagagcactatgattttcgactggaatggaatgaagttcttttgagttgggcagta
cctaagggaccatcttttgatacacatgataagaggctcgccgtacaggtggaagaccat
cctctggaatataggaactttgagggaactattccaaaaggggagtacggcggtggagta
gtcatgctctgggatgaaggcttttgggaacctcaaggaaatgtcgaggaaggactccgt
gaaggcatgctgaaatttgttctgaaaggaaagcggcttaagggaaagtgggccttggtc
cggctgaaagcaaaggccagtgaagcaaaggataactggcttttactgaaagaaaaagat
gagtatgttaaaaatacggatgggatatccgaatttatcaccagtatcagaactggacgc
accatgaaggaaatcgaagaaggggaagaagaaaaaatcatgagaaaccccttccatatg
gtggatgctcagctcgccaaattagttaatacggtccctgagggtgaggactggctctat
gagttgaaatatgatggctatcgaattattgcgtttgtggaaggaaacagtgtacgtcta
atcaccagaaatggtaatgactatatgaggcggtttcatgatgttgccacttcgcttatt
gaccttgctgctggaagggcgatggtactggatggagaaatggtagttacagacccatcg
ggcaaaacagatttccaggctctgcaaaactatatgaagaatcccaagggccaaaatcta
acgtatattgtttttgatcttcttgcacttaatggtgcggatcttcgaggacaacctttg
attcatagaaaagaaatgcttgaagctttgatgaaggatgcccctaaaaacctctactat
agtcgatatgttagagggaacggaaaggaaagctttgcggtagcctgtgcgtcagatatg
gaaggaatcgtaggtaaaaaagccgattccatctacagcggaaccaggaatggtgactgg
attaaactcaaatgtgataaaagacaggaatttgtcattggaggatatacactttccgac
aaaaaggtatggggaataagttctcttctccttggcgtctatgaaggtgaggaattggtc
tttgccggacgtgccggtactgggctaagtgagtctgatatgaaaactcttgaggaaaaa
tttgagaacataaagaggatggccccggtttttaaaactgcacctagtcctaagtctaat
gaaaagattacatggcttgagccaaagctggttgcggaaatcaaatttgctgaatggacg
aaagacaatctattaagacaggcaagctttaaaggtatacgaacagataaggatcctatg
gatataaaaagggaaaagccggaggaggaaatacagtcccaatcctctgaaaaagaagtg
gagaaaccaatgggagtaaatgcaaacagtattattatcgaaggaattaaaatttccaat
ccggataaagtgatgtttgatgaccctgtaatcacaaagttagatgtggttcagtattat
gaaaaggtttcggagcttatgctgccgtatgtgagtcacagggttctcagcattgtacgc
tgtcccaaaggagtttcacagacatgcttttataagaagcatcccggtgcgggaagcaaa
gggattattacaattcccattactaccagcagtggggagacagaagattacttctatatt
gagaatatttcagggcttatctctgaagtgcagatgggtacactagaatttcatacctgg
ggaagccgtatcgatgagcttgaaaagcctgatgtgatggtatttgatttggatccggat
gaaggaatggatctaagccaggtccgccagggagtactggatgttagaagtattcttaac
gaactttgtttgaactcgtatctcaagaccagtggcggcaaaggatatcatgtagtagtc
cctttaaaaccggttgttaattggaatgtgtttaacgattttgcaaggcgggttgccgaa
gttatggagaagaagtggcctgacagatacacaagtaatgtcagaaaggctaagcgtaca
gataagatatttattgattggattcgaaatggtagaggcgctacaagtgtcgctccctat
tccgtaagggcgaggaaaggtgcaagggtttccatgcctattgcatgggaggaacttgac
acagttgctcccgacggcatcactatggcggatgcacttttgaggttaaacggcaaagac
ccttggaaagattttttccagaataatcagatgcttaaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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