KEGG   Capsella rubella (pink shepherd's-purse): 17900420
Entry
17900420          CDS       T02984                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17900420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crb03041]
    17900420
Spliceosome [BR:crb03041]
 Complex C
  Other components
   Step II factors
    17900420
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD AAA_22 AAA_19 HA2_N AAA_30 nSTAND3 AAA_16 PhoH T2SSE ATPase DUF2532 SLFN-g3_helicase TsaE
Other DBs
NCBI-GeneID: 17900420
NCBI-ProteinID: XP_006306850
UniProt: R0IR48
Position
Unknown
AA seq 717 aa
MPSMAQREFRSSVQNSKPNPKFPTVSHFSMRQKIAEHRRSLPIATVEKRLIEEVRKNDIL
IVVGETGSGKTTQLPQFLYNAGFCREGKMVGITQPRRIAAVTVAKRVAEECEVELGQKVG
YSIRFDDTTSNLTRLKYMTDGLLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKK
IQRTRSKPTGEKTEIGNLALEVQTNTRDENVPQQNGVSRGCQGRKLSPLKLIIMSASLDA
RVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDYIDAALVTIFQIHLEEKPGDILVFLTG
QDEIESVERLVQERLQHLPEDKRKLLPVPIFSALPSEQQMKAFAPAPTGFRKVILATNIA
ETSITIPGIRYVIDPGFVKARSYDPRKGMESLDVVPASKAQTLQRSGRAGREVPGKCFRL
YPEREFEKLEDSTKPEIKRCNLSNIILQLKALGIDDIVGFDFIDRPSSGAIVKALAELHA
LGALTDDGKLEDPAGYQMSRLPLEPIYSKALILANQYNCLEEMLITVAVLTVESIFYDPR
EKREEARTAKNHFASVEGDHLTYLSVYRESDEFLEKKKVAGSGNNIDKIMKKWCKENFVN
SRSLKHARDIYRQIREHVEQMGFNVSSCGNDMLEFRRCLAASFFLKAALRQLDGTYRAME
SGEVVHIHPTSVLFRAKPECVIFDELMQTSKKYIKNLTRIDPLWLTELAPHHYKTAE
NT seq 2154 nt   +upstreamnt  +downstreamnt
atgccatcaatggcgcaaagagaatttaggagctctgtacaaaacagcaaaccgaaccct
aaatttccaactgtttctcacttcagcatgaggcagaagatagcagaacatagaaggtct
cttcctattgctacagtggagaaacgtttgattgaggaggttcgaaagaatgatattttg
attgttgttggtgaaaccggtagtgggaaaactactcaattgcctcagttcctatacaat
gctggattctgtcgggagggaaagatggttgggataacacaaccgaggcgtattgctgct
gtgactgttgctaaaagggtagctgaggaatgtgaggttgagttgggccaaaaggttggc
tattccattaggtttgatgatactacttctaatttgacaaggttgaaatacatgacagat
ggattgttgctgagagaagcgctgttggatccacatctttctagatattcagtcattatt
gtcgatgaagctcatgataggtctgttcatactgatgttttgctggccttactgaaaaaa
atacagcggactaggtcaaaacctactggggagaaaactgagattggtaatttagcatta
gaagtgcagacaaatacaagggatgagaatgttcctcagcaaaatggtgtctcaagaggg
tgtcaaggcagaaaattatctccattgaagctgatcattatgtctgccagtttggatgca
cgtgttttctctgagtattttggtggtgccaaagctgttcatgtgcaggggcgacaattt
ccggttgacattctttacactgttcatcctgaatcagattatatagatgccgccttggtc
accatatttcagattcatttggaggagaagccaggtgacatacttgttttccttactgga
caagatgaaatagaatctgttgagagacttgtccaagaaagacttcagcatttacctgaa
gacaaacgaaagctactgccagtccctatcttttctgctcttccatcagagcagcaaatg
aaagcttttgccccagctccgactggttttcgtaaggtgattttggccacaaatatagca
gagacatcaattacaattcctggaattagatacgttatagaccccgggtttgttaaggca
cgaagctatgatccaaggaaaggcatggagtcacttgatgttgttccagcatcaaaagca
cagacgcttcagagaagtggacgcgcaggacgtgaggttcctgggaagtgctttcgtctt
tatccggagagggaatttgagaaactggaagattcaactaaaccagagatcaagagatgc
aatctgtcgaatatcattttgcagctgaaggctctgggaattgatgatatagttggattt
gattttatagatagaccttcaagtggtgcaattgtaaaagcattggcagagttgcatgcg
cttggtgccttgacggatgatggtaaactagaggatcctgctggctaccaaatgtcacgg
ctccctctggaacctatttactccaaagctctaattttggccaatcaatacaactgcctt
gaggaaatgctgatcactgttgccgtgctcactgtggagtccatattttatgatccgcgg
gagaagagagaagaggcaagaactgcaaaaaaccactttgctagcgttgaaggggatcac
ctaacttatcttagtgtttatcgggagtcagatgagttcttagaaaagaaaaaagtagcc
ggcagtggaaacaatattgataaaattatgaaaaaatggtgtaaggagaactttgtgaat
agccgttccttgaagcatgctcgtgatatatataggcaaattcgtgaacatgttgaacag
atggggtttaatgtgtcttcatgcggaaatgacatgcttgagtttcgtagatgtcttgct
gcatcgtttttccttaaagcagcattgagacaattggacggtacatatagggctatggaa
agtggtgaggttgtccacatccacccaacttctgttttattccgtgcaaaacccgaatgc
gttatatttgacgagctcatgcaaaccagcaagaagtacatcaagaaccttacaagaatt
gatcccttatggttgactgagctggctcctcatcattacaaaacggcagagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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