KEGG T01039: CHLREDRAFT

Chlamydomonas reinhardtii: CHLREDRAFT_133143

Entry

CHLREDRAFT_133143 CDS T01039

Gene name

LIG1

Definition

DNA ligase (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

cre Chlamydomonas reinhardtii

Pathway

cre03030	DNA replication
cre03410	Base excision repair
cre03420	Nucleotide excision repair
cre03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:cre03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:cre03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:cre03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:cre03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 813 aa
MTQEPKADGGGPGTASKPAAPIASIFQRPAVRKAAAAAAAGGSPAPGNAKKSGGGAGAAA
SPLKASASPAKAGKGAAPAGAATSTRDAAGGEEGKAAAAAASPASKKDKTKARAPKVEKA
GEDGEEGEEAEGRKRPRAASSPARARRLHAHYRCAKRCTAPTAPQMEGVGTGALAAASKY
KEQDISAVISWKEGQPVPYSLLANTFEAIAGTTKRLEIVALLVSAFRAILATNPPDLLPA
VYLCVNRVAPAHTGIELGIGEATLIKAMCEATGKNEASIKKSYEEHGDLGVVVVGARSTQ
RTMFAPPPLTIASVLKAFQNIAQTTGTKSGDQKRGMIVKLLVAAKGNEPGYIVRSLQAKL
RIGLAEQSVLVALSHAVHLHRGGPAALKQPDVKLAEALEAGAQVVKQAYSECPSYDVLVP
ALLEHGSTDLLSRCHFMPGVPVKPMLAKATNGVGEVLEKFTDIEFTVEYKYDGERAQVHV
LDGGKTVHIFSRNAENNTPKYPDIVSRIKGLLKPEVDSIVFDAEAVAYDPEKKKILPFQV
LSTRARKDVAVDDIKVQVVLFAFDCLYLNGQSLLHKPLTERRAALYGSLTEKEGELLYAS
YKTSRDVEELESFLNESVEAGTEGLIVKTLGDTYEPSKRSSHWLKLKKDYMEGVGDTFDV
VPVGAFFGKGKRTGVFGAYLLAVYDPDTETYQTISKLGTGFSEEQLSQLAEAMRPHTIPQ
PRHYYTWDESLVPDVWFDAAVVWEVKAADLSISPRHKAALGLVDPTKGISIRFPRLIRVR
DDKSPEDATSAAQVADMFRNQAVIRQQKAQVSG

NT seq 2442 nt +upstreamnt +downstreamnt
atgacacaggagccaaaggctgatggcggtggcccaggcacagccagcaagcctgcggcc
cccatcgcctccatcttccagcgccctgccgtgcgcaaggctgccgcggcggccgcggcg
ggcggcagcccggcaccgggcaacgccaagaagtcaggtggcggcgccggcgctgccgcg
tctcctttgaaggcctcggcgtcacccgccaaggccggcaagggcgcggcccctgcgggc
gcggccaccagcaccagggatgcggccggcggcgaggagggcaaggcggcggcggcggca
gctagccctgccagcaagaaggataagaccaaggccagggcgccgaaggtggagaaggcg
ggagaagacggggaggagggcgaggaggcggaggggcgaaaaaggccgcgggccgcatca
agtccggcaagggcgcgcaggttgcatgcccactaccgttgcgccaagcgctgcactgca
cctaccgcaccacagatggaaggcgtgggcactggcgcactggccgccgcctccaagtac
aaggagcaggacatcagcgccgtgatcagctggaaggaggggcagccggtgccgtactcg
ctgttggccaacacattcgaggccattgccggcaccaccaagcgcctggagatcgtggcc
ctcttggtgtcggccttccgagccatcctggccaccaacccgcccgacctgctgcccgcc
gtgtacctgtgcgtcaaccgcgtggcgcccgcgcacaccggcatcgagctgggcatcggc
gaggccacactcatcaaggcgatgtgcgaggctacgggcaagaacgaggccagcatcaag
aagtcgtacgaggagcacggcgacctgggcgtggtggtggtgggcgcgcgcagcacgcag
cgcaccatgtttgcgccgccgccgctcaccatcgccagcgttctcaaggccttccagaac
atcgcgcagacgaccggcaccaaatctggtgaccagaagcgcggcatgattgtcaagctg
ctggtggcggccaaaggcaacgagcccggatacattgtgcgctcgctgcaggccaagctc
cgcatcggcctggctgagcagtctgtgcttgtggcgctgtcacacgccgtgcacctccac
cgcggcgggccggcggcgctgaagcagccggatgtgaagctggcggaggcgctggaggcc
ggggcgcaggtggtgaagcaggcctacagcgagtgcccgtcatacgacgtgctggtgcct
gcgctgttggagcacggctcgacggacctgcttagtcgctgccacttcatgccgggtgtg
cccgtgaagcccatgctggccaaggccaccaatggcgtgggcgaggtgctggagaagttc
acggacattgagttcacggtggagtacaagtacgacggcgagcgggcgcaggtgcacgtg
ctggacggcggcaagaccgtgcacatcttcagccgcaacgccgagaacaacacgcccaaa
tacccggacatcgtgtcacgcatcaaggggctgctcaagcccgaggtggactccatcgtg
tttgacgccgaagccgtggcgtacgacccagagaagaagaagatcctgcccttccaggtg
ctgtccacacgcgcgcggaaggacgtggctgtggacgacatcaaggtgcaagtggtgctg
ttcgccttcgactgtctctacctcaacggccagtcgctgctgcacaagccgctgacggag
cggcgcgcggcgctgtatgggtctctgactgagaaggagggcgagctgctgtacgccagc
tacaagaccagccgggatgtggaggagctggagagcttcttgaatgagtctgtggaggcg
ggcacggagggcctgatcgtcaagacgctgggtgacacgtacgagccctccaagcgctcc
agccactggctcaaactcaagaaggactacatggagggtgtgggcgacacgttcgatgtg
gtgcccgtgggcgcctttttcggcaagggcaagcggacaggcgtgttcggcgcctacctg
ctcgccgtgtacgacccggacaccgagacctaccagaccatctccaagctgggcaccggc
ttcagcgaggagcagctcagccagctggcagaggccatgcgcccacacaccatcccgcag
ccgcgacactactacacctgggacgagagtctggtgccggacgtgtggttcgatgcggcg
gtggtgtgggaggtgaaggcggcggacctgtccatcagcccgcggcataaggcggcgctg
ggcctggtggacccgaccaagggcatcagcatacgcttcccccgcctgatccgggttcgt
gacgacaagtcaccggaggacgccaccagtgcggcgcaggtggccgacatgttccgcaac
caggcagtcatacggcagcagaaggcacaggtgagcgggtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-CRE (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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