KEGG   Crassostrea gigas (Pacific oyster): 105322206
Entry
105322206         CDS       T03920                                 
Name
(RefSeq) nuclear pore complex protein Nup50 isoform X1
  KO
K14296  nuclear pore complex protein Nup153
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03013  Nucleocytoplasmic transport
crg03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    105322206
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105322206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crg03019]
    105322206
Messenger RNA biogenesis [BR:crg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     105322206
SSDB
Motif
Pfam: zf-RanBP NUP50 Ran_BP1 Nucleoporin_FG Stc1
Other DBs
NCBI-GeneID: 105322206
NCBI-ProteinID: XP_011419084
Position
Unknown
AA seq 771 aa
MAKRVAERELTDRNWDQEDDVEEAGTFAVATKSELQRRQIKTAKRTGASLGAGGKTSSFS
GFGGFSFKPTQTSTPFSANVKSFTNGKPEKPSLSSVTEVNGTPEKKGVEKKKENDSEQAT
YMSSLRSLNESVLAWIKQHVEKNPYCILTPIFTDYEKHIKTIEAYKSGASQAKSQTTDNS
EKKSAPALGSKETQSSLSTLFKPAPGSWTCDTCMIQNKGDVSKCVACQTSKPGAGASNPQ
TTSAAPALSSKETQPSLSTLFKPAPGSWTCDTCMIQNKGDISKCVACQTSKPGAGASNSQ
ATSAAPALGSKETQPSLSTLFKPAPGSWTCDTCMIQNKGDVSKCVACQTSKPGAGASNSQ
TTSAGTPDFKFGSNNVSNATTGSGFKLNTGGTTTGASSTSGFTFGSGENKSTASGFKFES
NGMANNSSTTSGFTFGKSEDKSATSGFSFGKKDEKSPSSGFTFGKSEEKLPASGFVFGKK
EDKPAAPGFTFGKSDDKPTNSGFTFGKSEDKSTTSGFTFGKSDDKTGSPGFSFGKKEESS
TTSGFSFGKSGTTDTSSSSGLKSGSGNESSSATGFSFGTNAGTGNVPKPAFSFGLGSGTT
NSESTKGFSFAPSTSAPGSSSFGPGFFSRPAGASDAAGTQEEEEYEPPKVESTEIAEEGS
QYSVKCKLFYQRDGKWNEKGVGFLHLKKPDGKAQLVVRADTNLGNILLNISLSPSIPLKR
QGTNNVYMMCVPNPKISPKDEENKPAAMLVRVKNAEAADELLEKMEDLRKE
NT seq 2316 nt   +upstreamnt  +downstreamnt
atggcaaaacgtgttgctgaaagagaactaactgatagaaactgggaccaagaagatgac
gttgaggaggctggaacatttgcagtagctacaaaatctgaattacaaagacgccaaatt
aagacagcaaaaaggaccggagcctcactgggtgctggtggtaaaacttcctccttctct
ggttttggtggattttcttttaaacccacacagaccagcacaccatttagtgccaatgtc
aaatccttcactaacggaaagccagagaagccttcactgagcagtgtgacagaagtgaat
ggaaccccagagaaaaaaggggtcgagaagaaaaaggaaaatgactctgaacaagccact
tatatgtcaagcctgaggagtctaaatgaaagtgtgctggcctggatcaagcaacatgtg
gagaaaaatccctactgcatcctgactccaattttcacagactatgagaaacacataaaa
accattgaggcatacaagtctggtgccagtcaagcaaagagtcaaacgacagacaattct
gagaaaaaatctgctcctgctttaggcagcaaggagacccagtctagtttgtccaccctg
tttaagccagcacctggtagttggacctgtgacacatgtatgatacaaaacaaaggtgat
gtcagtaagtgtgtggcctgtcagaccagcaagccaggggcaggagcttccaacccacag
actaccagtgcagctcctgctttaagcagcaaggagacccagcctagtttgtccaccctg
tttaagccagctcctggtagttggacctgtgacacatgtatgatacagaacaaaggggat
atcagtaagtgtgtggcctgtcagaccagcaagccaggggcaggagcttccaactcacag
gctactagtgcagctcctgctttaggcagcaaggagacccagcctagtttgtccaccctg
tttaagccagctcctggtagttggacctgtgacacatgtatgatacagaataaaggcgat
gtcagtaagtgtgtggcctgtcagaccagcaaaccaggggcaggagcatccaactcacag
actaccagtgcaggcacaccagacttcaaatttggaagcaataatgtatcgaatgccaca
acaggatccggatttaagttgaatactggtgggactactacaggagcttcatctacttct
ggatttacattcggatcaggtgagaacaagtctacagcatctggattcaaatttgaatcc
aatgggatggctaacaactccagtacgacatctgggttcacctttggcaaaagtgaagat
aagtctgctacttctggattttcatttgggaaaaaggatgagaagtcgccatcttctgga
ttcacatttggaaaaagtgaagaaaaattgccagcttctggatttgtatttggaaaaaaa
gaagataaacctgcagcacctggatttacatttggcaaaagtgatgataaacctaccaat
agtggatttacatttggcaaaagtgaggacaaatctacaacatctggatttacttttggg
aaaagtgacgacaaaactggatcaccaggattctcatttggcaaaaaggaagagagttct
acaacatcaggattttcttttggaaaaagtggaactacagacacttcctcctcatctgga
ttgaaatctggatctggaaatgaatccagttctgccactgggttttcatttggtacaaat
gctggaactggtaatgttccaaaaccagcgttcagctttggtttaggaagtggaactaca
aacagtgaaagtacaaaaggattttcatttgccccatccacctcggctcctggctcctca
tcatttggtccaggatttttcagcagaccagcgggagcttcagatgccgcgggtactcaa
gaagaggaagaatatgaaccaccaaaagtagagagcacagaaatagcagaagaaggctct
cagtattctgtcaaatgcaaactgttttatcaaagagatgggaaatggaatgagaaagga
gttggttttctgcacttgaagaagcctgatgggaaagcacagctagtagtgagagccgac
actaatctaggaaatattttgttgaatatcagcctgtcaccatctattcctctaaagaga
cagggaacaaacaatgtatatatgatgtgtgtgccgaaccccaagatcagccctaaagac
gaggagaacaagccggcggccatgttggtccgtgtgaagaacgccgaagctgctgacgag
cttctagagaagatggaggatctacgaaaggagtga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (161)   
   KEGG ORTHOLOGY (1)   
   RefGene (157)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (5)   
   Pfam (5)   
All databases (185)   

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