KEGG   Crassostrea gigas (Pacific oyster): 105334785
Entry
105334785         CDS       T03920                                 
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like
  KO
K12026  tripartite motif-containing protein 56 [EC:2.3.2.27]
Organism
crg  Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:crg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:crg04121]
    105334785
Enzymes [BR:crg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105334785
Ubiquitin system [BR:crg04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    105334785
SSDB
Motif
Pfam: zf-B_box zf-C3HC4 zf-RING_UBOX zf-C3HC4_4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 zf-RING_5 DUF3583 Pro_CA DUF5082 Muted
Other DBs
NCBI-GeneID: 105334785
NCBI-ProteinID: XP_034313547
Position
LG10:18193994..18197617
AA seq 636 aa
MASVTSTITEEFLTCTICFEIYKDPKTLPCLHSFCKDCINNLRQEKAGKNSYPCPICREV
FQLPKDGADDLKTNFCLKNLIDFVTSTKEVKKLCSFCRIKGENINATSLCLTCNDLLCTE
CADHRHKATTLTLHHRVVPLAEVTAGKYNDEIRSKQQIPCSKHEGEDLRFFCETCDVPVC
RDCIVLGHQNHKCLAPSDARKHMDENLNSLMDLLNQKIKTFQNAKEKVVTSQKKIETEKK
KVEENLERQMSALIKKITDSKKAVEEEFNQFVKSKQDILHQKEASIESERKLLNETYSFC
SNILRCGSDIEVLSMKTEMKERLSKLQSSNDTEICDIKELVLPDIQFCNERTIFKMIVNT
NETESSKPKSQSNAVVAKEHKDGSDRKDEATIKGFQDQLESKKPYYTSVAWIDEDTIAVV
DKRNQKLKLISREKGVATTTFCKHCLVATSFKNGIACKSEGGTLNVYNSSLEPRKFISSV
STILTCHPNSHEICWLSGLKRICILRGNDIKEITIYDPNTDSNLSDPKFGHVLINGMFAV
SDWDKECVFLIAKSGRVSRRKYIDANPKPGSISSDSNCNVYVCDFQRNSLIIFTQSGETL
RSVQLGAIAPNPKSIAVRNRKALIANGNSIVEVELK
NT seq 1911 nt   +upstreamnt  +downstreamnt
atggcatcagtaacatcgacaatcacagaagaattcctgacgtgcaccatttgttttgaa
atttataaggaccccaaaacacttccatgcctgcattctttttgcaaagactgcatcaat
aacctacgacaagagaaagctggtaaaaacagttatccatgtccaatttgtagagaagtg
tttcaacttcccaaagatggcgcagacgatttaaaaacaaatttctgtttaaagaaccta
atcgattttgtcacttcaacgaaagaggtaaaaaaattgtgctcattttgccgtataaag
ggtgaaaacataaatgcgacatccctgtgtctgacatgcaatgatttactttgtactgaa
tgcgcggaccatcgccataaagcaacgacattaaccttacaccaccgagttgttcccctt
gccgaggtgacagctgggaagtataacgacgagattcgttcaaaacagcaaatcccttgt
tcgaaacacgagggagaagatctgcgattcttttgtgaaacttgtgacgttccagtttgt
cgagactgtatagttcttggtcaccagaaccacaagtgtttggctccatcagatgcaaga
aaacatatggatgaaaatctaaattctctgatggatttgttaaaccaaaaaataaaaaca
ttccaaaacgcgaaagaaaaggttgttacttcccagaaaaaaattgaaacggaaaagaag
aaagttgaagaaaatttggaaaggcaaatgagtgccttaattaaaaagataactgattcc
aaaaaggcagtcgaagaagaatttaatcagtttgtgaagtcaaagcaagatattctacat
caaaaggaagcatctatagaatcggaaagaaagctacttaacgaaacttattctttttgt
agtaacattttaagatgtggaagcgatattgaggttctttcaatgaaaacagaaatgaaa
gaacgtttatcaaaattacaatcttcaaatgatacagaaatatgcgatataaaggagcta
gttcttccagacatccagttttgcaacgaaaggaccatctttaaaatgatagtaaatacg
aacgaaacggaatcgagcaaaccgaaatcgcaaagcaatgcagtggttgcaaaagaacat
aaagatggatccgatagaaaggatgaagcaactattaaaggctttcaggaccaactagag
tccaaaaagccgtattacacaagtgtagcttggatagatgaagatacgatagctgttgtg
gacaaaagaaatcaaaagcttaaactcatttcaagagaaaaaggtgtggccacgactaca
ttttgtaaacactgtttagtggctacttctttcaaaaatgggatagcctgcaagtcagaa
ggaggcacactaaacgtttacaacagttcattagaacctcgaaaatttatttcttcagtt
tcgacaatattgacctgtcaccccaattctcatgaaatatgctggctttctggcttgaaa
agaatatgcatattaagaggtaatgacattaaggagatcaccatttacgatccaaacaca
gattccaacttaagcgatcctaagtttggtcatgtgcttatcaacggcatgtttgctgtt
tcggattgggataaagagtgtgtgtttctgatagcgaaatcgggacgtgtttcaagaagg
aaatacattgatgctaatccaaagcctggatcaatttcttctgattctaactgtaatgtt
tacgtgtgtgatttccaaagaaacagtttaataatttttacacaaagtggagagactttg
cgctcagttcaattaggagcaatagcaccgaatccaaaaagtattgcagtaagaaataga
aaggctttgattgcaaatggcaattccatcgttgaggttgagctcaaatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (12)   
   Pfam (12)   
All databases (49)   

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