KEGG   Carnobacterium sp. 17-4: CAR_c16400
Entry
CAR_c16400        CDS       T01452                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
crn  Carnobacterium sp. 17-4
Pathway
crn03030  DNA replication
crn03410  Base excision repair
crn03420  Nucleotide excision repair
crn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:crn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CAR_c16400 (ligA)
   03410 Base excision repair
    CAR_c16400 (ligA)
   03420 Nucleotide excision repair
    CAR_c16400 (ligA)
   03430 Mismatch repair
    CAR_c16400 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crn03032]
    CAR_c16400 (ligA)
   03400 DNA repair and recombination proteins [BR:crn03400]
    CAR_c16400 (ligA)
Enzymes [BR:crn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CAR_c16400 (ligA)
DNA replication proteins [BR:crn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CAR_c16400 (ligA)
DNA repair and recombination proteins [BR:crn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CAR_c16400 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CAR_c16400 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CAR_c16400 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CAR_c16400 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 RNA_ligase HHH
Other DBs
NCBI-ProteinID: AEB30298
UniProt: F4BSM8
Position
complement(1700106..1702043)
AA seq 645 aa
MKDAPSIPDTDYDKLYNELVALEEAFPDLISNDSPTQRIGGTILPGFEKVVHEVPMLSLG
NAFNEGDLLDFDRRIKKITDQPFSYICELKIDGLAVSLTYEKGKLVRAATRGDGTVGENV
TQNIRTVKSVPLRLKNPYSIEVRGECYMPKDSFIKLNQEREENGEAIFANPRNAAAGGLR
NLDPKETAKRNLNTFLYTIGDFGELTAVSQEDALHQLDELGLRTNHDRRVFQTIEEVWAY
TQEFQEKRTALPYEIDGIVIKVNEFAVQEEVGFTVKAPRWAIAYKFPAEEAHTVIRDIEW
SVGRTGVVTPTAIMDPVQLAGTTVQRASLHNEDLIHERDIRLLDTVVVHKAGDIIPEVTR
VILDERPEDSQPYAIPTHCPACDSDLIHLEEEVALRCMNPKCPAQITEGLSHFVSRNAMN
IDGLGIRVLMQMFEKDMVHDVADLYTLTFDQLVTLDKIKEKSANNLLNAIDASRSNSLER
LLFGLGIRHVGAKAAKLIAERFETMEAVQQAEKDMIISIEGIGEIIAESVVAYFSLPEVN
ELIQELKNSQVNMNYLGKKKVEVATVDSYFNGKTVVLTGKLTHFTREEAKERIENLGGNV
TGSVSKKTDLVVAGEEAGSKLAKAESLNILVWDEDQLLETLEGEE
NT seq 1938 nt   +upstreamnt  +downstreamnt
gtgaaagatgctccatctatacctgacacggattacgacaagttgtacaatgaactagta
gctttggaagaagcatttccggacttaatcagtaatgattctcccacacaacgcattgga
ggaaccatcctgcctggttttgaaaaagtggttcatgaagttcctatgttaagtcttgga
aatgcatttaacgaaggagacctacttgattttgatcgtcgtatcaaaaaaataacggat
caaccatttagctacatttgtgagctgaaaattgatggtttagccgtatcgttaacgtat
gaaaaaggaaagctggttcgtgcagccacacgtggagatggaactgtgggtgagaacgtg
actcaaaatattcgtaccgttaaatcggttccgttacgcttgaaaaatccttattctatt
gaagtgcgcggggaatgttacatgcccaaagattcctttattaaattgaatcaagaacgc
gaagaaaatggggaggcaatctttgcaaacccaagaaacgcagcagctggtgggttgcgt
aatttagatccaaaagaaacagctaaacgaaatttaaatacttttttatacacgattggt
gattttggtgaattaacagctgtaagccaagaagacgcactccatcaattagatgaattg
ggacttcgaacgaatcatgatcgcagagtgttccaaacaattgaagaagtatgggcatac
actcaagaatttcaagaaaaaagaactgctttgccttatgaaatcgatggtatcgtgatc
aaggtaaatgagtttgcagttcaagaagaagttggttttaccgttaaagctcctagatgg
gctattgcctataagtttccggcagaagaagctcatacagtgattcgcgatattgaatgg
tcagtcggtcgaacgggagttgtgacgccaacagctattatggatcctgttcaattagcg
ggcactacggttcagcgagcaagtctgcacaatgaagatttgatccatgaacgagatatc
cgcctattggacactgtagtcgttcataaagcaggagatatcattccagaagtcactcgt
gtcattttggatgaacgaccggaagacagccaaccttatgctattcctacgcactgtccg
gcttgtgacagcgatctgattcatttggaagaagaagttgctttacgctgcatgaatcct
aaatgtccggctcaaattacggaaggcttatctcattttgtttctcgaaacgcgatgaat
attgacggattaggcattagagtattaatgcaaatgtttgaaaaagatatggttcacgat
gtagcagatctttatacattaacgtttgatcaactggttacgttagataaaattaaagaa
aaatcagctaataatctactaaatgctatcgatgcaagtcgcagcaattcattagaaaga
ctgctctttggattaggtattcgtcatgtaggcgcaaaagcggctaaattaattgcagaa
cgttttgaaacaatggaagctgtgcagcaagcggaaaaagacatgattatttcaattgag
ggtatcggagaaattatcgctgaaagtgtcgtcgcgtatttcagtttaccagaagtgaat
gaactgattcaggaattaaaaaacagccaggtcaacatgaattatttagggaagaaaaaa
gtagaagtcgcaacagttgattcttattttaatgggaaaacagttgttttaacggggaaa
ttgacgcattttactcgtgaagaagctaaagaacgtattgaaaatcttggcggaaatgtg
actgggagcgtctctaagaaaactgatttggtcgttgcaggtgaagaagccggcagcaag
ttagcaaaagctgaatcattaaatattcttgtctgggatgaagatcagttgttggaaaca
ttagaaggagaggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system