KEGG   Cryobacterium sp. LW097: B7495_12110
Entry
B7495_12110       CDS       T04908                                 
Name
(GenBank) recombinase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cry  Cryobacterium sp. LW097
Pathway
cry03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cry00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B7495_12110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cry03019]
    B7495_12110
   03400 DNA repair and recombination proteins [BR:cry03400]
    B7495_12110
Enzymes [BR:cry01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     B7495_12110
Messenger RNA biogenesis [BR:cry03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     B7495_12110
DNA repair and recombination proteins [BR:cry03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      B7495_12110
SSDB
Motif
Pfam: DEAD Helicase_C ResIII RecQ_Zn_bind SWI2_SNF2
Other DBs
NCBI-ProteinID: ASD22733
Position
2596981..2599155
AA seq 724 aa
MEPDRDRRVPRRCGLQARRAVTPNTREAALEILRTLVGRPDADFHEGQYEAIETLVDQRR
RALVVQRTGWGKSAVYFVATLLLRRQGAGPTILVSPLLALMRDQVAAAARAGVRAVSINS
ANAHEWTDVLAALRADEVDVLLVSPERLNNPSFRDEQLPALLERVGLLVVDEAHCISDWG
HDFRPDYRRLRDLIAAMPAGVPVLATTATANSRVVTDVAEQVAVGGSDVVTIRGPLARAS
LRLGVLRLPDSRARLAWLLSHLAELPGSGIIYTLTVSAAEDTARLLRDAGHAVRAYTGQT
DTTEREESEGLLKANQVKALVATSALGMGFDKPDLGYVLHLGAPSSPVAYYQQVGRAGRA
TENADVLLLPGVEDEAIWQYFATSSMPSQHKAEAVLQALHANGGAPLSTPALESRVDLRR
SPLELLLKVLDVDGAVRRVTGGWLATGQPWVYDSDRYERIGAARVAEQNAMLDYERISGC
RMEFLQRALDDDTAVPCGRCDNCTAPWYPTDVQADAASTAASALDRVGVALEPRAQWPTG
ADRLGVSAKGRIDAGDRVLPGRALARLTDLGWGNTLRDTFAPNTPDAPASPALLAACVRV
LAEWGWAERPVGVVAMPSRRHPLLVASVAAELSRVGRLPQLGTLSLVGAGPTGESGGNSA
YRLSSVWGAFEVGPELAANLAGADGPVLLVDDLGDSRWTLTVAGRLLRRAGAPGVLPFTL
ALRS
NT seq 2175 nt   +upstreamnt  +downstreamnt
atggagcccgatcgcgaccggcgggttccccgccgatgtggcctccaggctcgacgcgct
gtgacgccgaatacccgcgaggccgccctcgagatcctgcgcaccctggtgggccggccc
gacgccgacttccacgagggccagtatgaggccatcgaaaccctcgtcgaccagcgccgc
cgggccctcgtggtgcagcgcaccggctggggcaagtcggcggtctacttcgtcgcgacc
ctgctgctgcgccgccagggtgccggccccaccatcctggtgtccccgctgctggccctg
atgcgtgaccaggtggccgccgctgcccgcgccggcgtgcgggccgtgtcgatcaactct
gccaacgcccacgagtggaccgacgtgctcgctgcgctccgcgcggacgaggtcgacgtt
ctgctggtctcccccgaacgcctgaacaacccgtccttccgcgacgagcagctgcccgcg
ctgctcgagcgggtggggctgctcgtggtcgacgaggcgcactgcatctcggactggggc
cacgacttccggccggactaccggcgcctgcgggacctgatcgcggcgatgccggccggg
gtgccggtgctggccaccacggccacggccaacagccgggtggtgacggatgtggcggag
caggtagcggtcgggggcagtgacgtcgtcaccatccgcggccccctcgcccgcgcgtca
ctgcgcctgggcgtgttgcgcctgccggactcccgcgcccggttggcctggctgctcagc
cacctcgccgagttgcccggcagcggcatcatctacaccctcacggtctcggccgccgag
gacaccgcccggctgctgcgggatgccggccacgccgtccgtgcgtacaccggccagacc
gacaccaccgaacgcgaggagtccgaggggctgctcaaggccaaccaggtgaaggccctc
gtggccaccagcgccctgggcatgggcttcgacaagcccgacctgggctatgtgctgcat
ctcggcgcccccagcagcccggtcgcctactaccagcaggtcggccgtgccggccgtgcc
actgagaatgccgacgtgttgctgctgccgggtgtcgaagacgaggccatctggcagtac
ttcgccacctcgtcgatgcccagccagcacaaggccgaggccgtgctgcaggcgctacac
gccaacggtggcgccccgctgtccacgcccgccctggagtcccgggtcgacctccggcgt
tccccgctggaactgctgctcaaggtgctcgacgtcgacggcgccgtgcgccgggtgacc
ggcggctggctggccaccggacagccctgggtctacgacagcgatcgctacgaacgcatc
ggcgcggcaagggtggccgagcagaacgccatgctcgactatgaacgcatctccggctgc
cggatggagttcctccagcgcgctctcgacgacgacaccgccgtgccctgcggccgctgc
gacaactgcacggccccctggtaccccaccgacgttcaggccgatgcggcgagcaccgcg
gcctcggccctggaccgggtgggcgtggccctggaaccccgcgcccaatggcccaccggc
gccgacaggctcggcgtgagcgccaagggccgcatcgacgccggcgacagggtgctgccc
ggtcgcgctctggcccgactcaccgacctgggctggggcaacaccctgcgcgatactttc
gcgcccaacaccccggatgcgcccgcctcgccggcgctgctggccgcctgcgtgcgggtg
ctcgccgagtggggctgggccgaacggcccgtgggggtggtggccatgccgtcccgccgg
catccgctactggtggcctcggtggcagccgaactcagccgggtggggcggctgccgcaa
ctgggcacgctgagcctggtgggcgcagggcccaccggcgaatccggcggcaacagcgcc
taccggctctccagcgtctggggtgccttcgaggtcggcccggagctggccgccaacctg
gccggagccgacgggccggtgctgctggtcgacgacctcggcgacagccggtggaccctc
accgtcgccggccggctgctccgccgcgcgggcgcgccgggcgtgctgccgttcacgctg
gcgctgcggtcgtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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