KEGG   Chlorocebus sabaeus (green monkey): 103234195
Entry
103234195         CDS       T04361                                 
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
csab  Chlorocebus sabaeus (green monkey)
Pathway
csab03013  Nucleocytoplasmic transport
csab03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csab00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103234195 (UPF1)
   03015 mRNA surveillance pathway
    103234195 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csab03019]
    103234195 (UPF1)
Enzymes [BR:csab01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     103234195 (UPF1)
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     103234195 (UPF1)
Messenger RNA biogenesis [BR:csab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     103234195 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     103234195 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 103234195
NCBI-ProteinID: XP_007994027
Ensembl: ENSCSAG00000005276
Position
6:17291189..17328768
AA seq 1137 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGSAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNANLTQHTDYGDEIAIELRSSVGA
PVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPK
RFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA
PSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLK
DETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQA
TEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQ
YRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSG
TSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEV
EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK
QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAI
IPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQA
NGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISM
SQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3414 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacgggcccagctctcagactctcactttcctggacacggaggag
gccgagctgctcggcgccgatacacagggctccgagttcgagttcaccgactttactctt
cctagccagacgcagacgccccccggcggccccggcggcccgggcggtggcggcgcggga
ggcccaggcagcgcgggcgcgggcgccgcggcgggacagctcgacgcgcaggttgggccc
gaaggcatcctgcagaatggggctgtggacgacagtgtagccaagaccagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggatctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaatggacgtggaaatacttctggcagccatattgtaaatcacctt
gtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaactgcggctgtcgcaatgtcttcctcctcggcttcatcccagccaaa
gctgactcggtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaag
gacatcaactgggacagctcgcagtggcagccactgatccaggaccgctgctttctgtcc
tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacggcacag
cagatcaacaagctggaggagctatggaaggaaaacccttctgccacactggaagacctg
gagaagccgggggtggacgaggaaccgcagcacgtcctcctgcggtatgaggacgcctac
cagtaccagaacatattcgggcccctggtcaagctggaggccgactacgacaagaagctg
aaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataatgcaaactta
actcagcacacagattatggcgatgagattgccattgagctgcggagcagcgtgggtgca
cccgtggaggtgactcacaacttccaggtggattttgtgtggaagtcgacctcctttgac
aggatgcagagtgctttgaaaacgtttgccgtggacgagacctcagtgtccggctacatc
taccataagctgctgggccacgaggtggaggacgtaatcatcaagtgccagctgcccaag
cgcttcacggcgcagggcctccccgacctcaaccactcccaggtttatgccgtgaagact
gtgctgcaaagaccgctgagcctgatccagggcccgccaggcacggggaagacagtgacg
tcggccaccatcgtctaccacctggcccggcaaggcaacgggccggtgctggtgtgtgct
ccgagcaacatcgccgtggaccagctaacagagaagatccaccagacagggctgaaggtc
gtgcgcctctgtgccaagagccgcgaggccatcgactccccagtgtctttcctcgccctg
cacaaccagatcagaaacatggacagcatgcctgagctgcagaagctgcagcagctgaaa
gatgagactggggagctgtcgtctgctgacgagaagcggtaccgggccttgaagcgtacc
gcggagagagagctgctgatgaatgcagatgtcatctgctgcacatgtgtgggcgccggc
gacccgagactggccaagatgcagttccgctccattttaatcgacgaaagcacccaggcc
actgagccagagtgcatggttcccgtggtccttggggccaagcagctgatccttgtaggt
gaccactgccaactgggcccggtggtgatgtgcaagaaggcggccaaagccgggctgtcg
cagtcgctcttcgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtccag
taccggatgcaccctgcactcagcgccttcccgtccaacatcttctacgagggctccctc
cagaatggtgtcactgcagcggatcgtgtgaagaagggatttgacttccagtggccccag
cccgataaaccgatgttcttctacgtgacccagggccaagaggagatagccagctcgggc
acctcctacctaaacaggaccgaggctgcgaacgtggagaagatcaccacgaagttgctg
aaggcgggcgccaagccggaccagattggcatcatcacgccctacgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaagtg
gagatcgccagtgtggacgcctttcagggacgcgagaaggacttcatcatcctgtcctgt
gtgcgggccaacgagcaccaaggcattgggtttttaaatgaccccaggcgtctgaacgtg
gccctgaccagagcaaggtacggcgtcatcatcgtgggcaacccgaaggcgctgtcgaag
cagccactctggaaccacctgctgaactactacaaagagcagaaggtgctggtggagggg
ccactcaacaacctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaac
accatcaacccgggagcccgcttcatgaccacagccatgtatgatgcccgggaggccatc
atcccaggctccgtctatgatcggagcagccagggccggccctccagcatgtacttccag
acccatgaccagattggcatgatcagtgccggccccagccacgtggctgccatgaacatt
cccatccccttcaacctggtcatgccgcccatgccaccgcctggctattttggacaagcc
aacgggcccgctgcaggccgaggcaccccgaaaggcaagactggccgtgggggacgccag
aagaaccgctttgggcttcctgggcccagccagaccaacctccccaacagccaagccagc
caggatgtggcgtcacagcccttctctcagggcgccctgacgcagggctacatctccatg
agccagccctcccagatgagccagcccggcctctcccagccggaactgtcccaggacagt
taccttggtgacgagtttaaatcacaaatcgacgtggcgctctcgcaggactccacgtac
caaggagagagggcgtaccagcatggcggggtgacggggctgtcccagtactaa

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