KEGG   Camelina sativa (false flax): 104703915
Entry
104703915         CDS       T05044                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104703915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csat03021]
    104703915
Enzymes [BR:csat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104703915
Transcription machinery [BR:csat03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     104703915
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 104703915
NCBI-ProteinID: XP_010418307
Position
7:complement(32715945..32723547)
AA seq 1454 aa
MDNDCEELQVPMATLTSIGFRISNNNDREKMSVIPVESANQVTDSRLGLPNPDAICRTCG
SKDRKVCEGHFGVVHFQYPIINPYFLKEIAALLNKICPGCKYIHKKQFQITEDQPDRCRY
CTSNTGYPLMKFRVTTKEVFRRSGIVVEVNEESVMKLKKRGVSTLPSDYWSFLPKDPNID
ESCLKETKRILTHAQAYTLLSGIDQRLIKKDIPMFDSLSMASLPVTPNAYRVTEIVHQFN
GARLIFDERIRIYRKLIGFQGNTLDLSSRVIECMQYSRLFSETVSSSQDSANPYQKKSDT
PTLCGLRFMKDVLLGKRSDHSFRTVVVGDPSLNLHEIGIPQTIAERLQVSENLNDWNKER
LVAYVFHRLFVLRKEVLVRRGDILVAIRQIDDLQAGDKIFRPLMDGDTVLMNRPPSIHQH
SLIAMSVRTLPTISVVSLNPICCLPFRGDFDGDCLHGYIPQSIQAKVELDELVALDKQLI
NRQNGRNLLSLGQDSMTAAYLVNVEKNCYLNRAQIQQLQMYCPFQPPPPAIIQASPSSTE
PQWTGMQLFGMLFPPGFDYTYPLNDVVVSNGELLSSSEGSAWLRDVEGNFIQGLLKHDQG
KVLEIIHSAQEMLSQWLLMRGLSVSLADLYLSSDPQSRKNLTDEIRYGLLEAEQVCNKQQ
LMFESWRDLLADNGEDEEEDAVGDLARFCYDRQKSARLSKLAVSAFKDAYRDVQALAYRY
GDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVALSFGFPRKLTCASWNDPNSPLRG
GTKGEDKTATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRRLMF
FMRDIYAAYDGTVRNSFGNQVVQFTYETDGPVEEITGEALGSLSACALSEAAYSALDQPV
SLLETSPLLNLKNTLECGSKKGQREQTVSLYLSETLSKKKHGFEYGALEIKNHLEKLSFS
EIVSTSMIIFSPSTNTEVPLSPWVCHFHISEKLLKQKQLNAESVVSSLNEQYKSRIRELK
LNLVDLDIQSTNHCSSDDKAMKDDSFCITVTVIEASKHSSLELDAIRLVLIPFLLDTPVK
GYQEIKKVDVLWTDRPKAPKRNGNHLAGELYLRVTMYGDRGKRNCWSALLETCLPIMDMI
DWSRSHPDNIRQCCSVFGIDAGRNIFVANLESAVSDTGKTILREHLLLVADSLSITGEFV
ALNAKGWSKQRQAESTPAPFTQACFSSPSQCFLKAAKEGVIDQLQGSIDALAWGKVPGFG
TGDQFEIIISPKVHGFTTPVDVYEVLSSTPLKTVTKLATSSAHKSDRFTVQPLNMLDTGF
PKAFKALNGKGISLSQLKTMFTWDDIENLSRSLKLILYNYEINAPLSERDETFVSMVLCF
HPNMAEKIGPGFQGIRVANSKHGDSRCFEVVRIDETTEDFSYHKCVLGATKIIAPGKMNF
YKSKYLKNGKVQHR
NT seq 4365 nt   +upstreamnt  +downstreamnt
atggacaacgattgcgaggagcttcaggtccccatggcaactctaacctcaattggtttt
aggatttcaaataataatgatcgagagaaaatgtctgttataccggtcgaatcagcgaat
caggtgactgattctcggctagggctaccaaatccggatgctatctgcagaacctgtggc
agcaaagatcgaaaagtttgcgaagggcattttggggttgtacatttccagtatccgata
attaacccgtacttcctcaaggagatagctgcgttgctcaacaaaatctgccctggctgt
aaatacattcataaaaagcagtttcagattacagaagaccaacctgatagatgtagatat
tgcacctcgaatacaggttatcctctaatgaagtttagggtaactactaaagaagtcttc
aggagatccggaatcgttgttgaagtaaacgaagagtctgtgatgaaactcaagaaacgg
ggagtgtcaacattgccatctgactattggagttttttgccaaaagaccccaatattgac
gagagctgtctgaaagaaaccaaacgtattctaacgcatgcacaggcttatactctgtta
tctgggattgatcagaggctcatcaagaaggacatccccatgttcgactctttaagtatg
gcatctcttcctgttacaccaaacgcttaccgtgtaaccgaaatagtccatcagtttaac
ggagcccgattaatctttgatgagcggattcgaatctacaggaaactaatcggcttccag
ggaaacacacttgatttgagttctcgtgtgatcgaatgcatgcaatactccagactcttt
tcggagactgtgtcttcgagtcaagattcagcaaatccataccaaaagaagtcagacact
cctacactatgtggtctaaggttcatgaaagacgtgctgcttggtaaaagaagtgatcat
tcattcaggacagtagtagttggtgatccttccttgaatcttcacgagattggcataccc
cagacgatagcagaaaggcttcaagtatcagagaatcttaacgactggaacaaggaacgg
cttgtcgcttacgttttccacagactgttcgtgttacgtaaagaggtgcttgtgagaaga
ggagatatcttggtggctattcgacaaatcgacgacctccaagctggagacaaaattttc
aggcctttaatggatggagacacagtgcttatgaacagaccgccttcgattcatcagcat
tctcttattgcaatgtctgttagaaccctccctacgatctctgttgtctccctgaatcct
atctgctgtttgccgtttcgtggtgattttgatggagattgtcttcacggttacattcct
cagtctattcaagcaaaggttgagcttgatgagcttgttgctttggataagcagcttatt
aaccgacagaatggtcggaatttgctttctctaggacaggacagcatgacggcagcttat
ctggttaatgttgagaaaaactgttatctgaatcgagctcagatccagcagcttcaaatg
tactgcccatttcagcctcctccgcctgcgataatccaagcttctccttctagcactgag
cctcaatggacgggaatgcagctttttgggatgctgtttcctcccgggtttgactacact
taccctctgaatgatgtggttgtgagtaatggagagcttttgtcttcctctgaaggatca
gcttggctccgggatgtagaagggaattttatccagggcttgcttaaacacgaccaaggg
aaagttcttgaaatcatccattcagctcaagaaatgctatctcagtggttgttgatgcga
ggattgagtgtgtccttggcggatttgtacctttcctctgatccacagtctcgtaaaaac
ttgactgatgagattagatacggattgctggaagctgaacaagtctgcaacaagcaacag
ctaatgtttgaatcttggagagatcttcttgcagataatggggaggacgaggaagaggat
gcagttggggacttggcccggttctgttatgatagacaaaaatcagctagattaagcaaa
cttgcagttagtgcttttaaggatgcttacagagatgttcaggcactggcgtataggtat
ggcgaccaatccaattcttttttgatcatgtcgaaagctggtagcaaaggtaatattggg
aagctggttcagcacagtatgtgtattggtctgcagaattctgcagttgctttgtccttt
gggtttccgcgcaagctgacttgtgcttcttggaacgaccctaacagcccacttcgcggc
ggtacaaagggagaagacaaaaccgctacagagtcatatgttccttatggagtcattgag
aattcgtttctaacgggtctgaatccgttggaatcttttgttcattcagttacaagtcgt
gacagctcattcagtggtaatgctgatctcccagggacactgagcagaagattgatgttc
ttcatgcgggacatatacgctgcttatgatggtacagtgagaaattctttcgggaaccag
gtagtccagtttacttatgagactgatggtcccgttgaagagatcaccggtgaagcactt
gggtcactctctgcttgtgcattatctgaggcagcttacagcgcactggaccagccagtc
agccttcttgaaacttcgccgcttctgaatcttaagaataccttggaatgtgggtcaaag
aaaggtcaacgagaacagactgtgtctttgtatttgtctgaaaccctttcaaagaaaaag
cacgggtttgaatacggggcactggagatcaagaaccacttggagaaacttagtttctca
gagatcgtttcaacatctatgataatattctctccaagtactaacacggaagtaccatta
agcccgtgggtctgccattttcacatctccgagaaactactgaagcagaaacaactgaac
gcagaatctgttgtttcctcattaaacgagcagtacaagagcaggatcagagaactgaag
cttaatctagttgatttggatatacaaagcacgaaccactgctcttcagacgataaggca
atgaaggatgatagcttttgcatcacggtgactgtaatcgaagcctcaaagcactcctct
ttggaacttgatgctattcgtctcgttttgatcccttttcttcttgacactcctgtcaaa
ggttaccaagagattaaaaaggtcgatgttttgtggaccgaccgtccaaaagctccaaaa
aggaacgggaatcatttggcaggtgagctttacttgagggttacaatgtatggagatcgg
ggaaaaagaaactgttggagtgctctcttagaaacctgtcttcccatcatggacatgatt
gactggagccgaagccatcctgataatatccgacaatgctgctcggtttttggaatagac
gctggacggaacattttcgtagcaaatttggagtctgcggtgtcagataccggtaagact
atactaagagaacatctgcttctcgtagctgatagtctctctattaccggagaatttgtg
gcattaaacgccaaaggttggagtaaacaaagacaagctgagtccactcctgcacctttt
actcaagcatgcttctcgagtccaagtcaatgctttctcaaagctgctaaggaaggtgtc
atagaccagcttcaagggtctatcgacgccttagcttggggaaaagttcctggttttgga
actggagatcaattcgaaatcatcatttcgccaaaggttcatgggtttactacaccggtg
gatgtgtatgaagttctgagtagcacacctctaaagacagtgacaaagcttgcaacaagc
tctgcgcacaaatcagaccgattcacagtccagccactaaacatgcttgataccggattt
cccaaagctttcaaggcactcaatgggaaagggatttctctgtcacagcttaaaacgatg
tttacatgggacgacattgagaatctttcccggtcactgaaactcatactctacaactac
gaaatcaatgctccgttgagtgagagagatgagacttttgtcagcatggttttgtgcttc
caccccaacatggctgagaagatcggaccaggcttccaaggaatccgggtcgctaattcg
aagcacggggattcccgttgctttgaggttgtaagaatagacgagacaacagaagacttt
tcgtaccacaagtgtgtcttaggagcaacaaagatcattgcaccagggaaaatgaacttc
tacaagtcaaagtatctcaagaatggtaaagtccagcaccggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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