KEGG   Camelina sativa (false flax): 104716737
Entry
104716737         CDS       T05044                                 
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
csat  Camelina sativa (false flax)
Pathway
csat03015  mRNA surveillance pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104716737
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104716737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104716737
   03041 Spliceosome [BR:csat03041]
    104716737
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104716737
   mRNA cycle factors
    Stress granule specific factors
     104716737
Spliceosome [BR:csat03041]
 Complex C
  Other components
   Complex C specific factors
    104716737
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_3 RRM_7 Nup35_RRM Nup35_RRM_2
Other DBs
NCBI-GeneID: 104716737
NCBI-ProteinID: XP_010432462
Position
10:complement(2981445..2986061)
AA seq 632 aa
MAQVQLQGPAANGSTVAVTSAPVNSGGAAAATQFGTTSLYVGDLDLNVTDSQLFDAFSQM
GQVVSVRVCRDLATRRSLGYGYVNFTNPQDASRAIQELNYIPLYGKPIRVMYSHRDPSVR
RSGAGNIFIKNLDDSIDHKALHDTFSTFGNIVSCKVAVDSSGQSKGYGFVQYASEESAQK
AIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLGENTTDDDLKTAFVEYG
KITSAVVMKDGDGKSKGFGFVNFENADDAAKAVEALNGHKFDDKEWYVGRAQKKSERETE
LRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKG
SGFVAFSIPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMPPSV
GPRMPMYPPGGPGIGQQMFYGQAPPNMIPPQPGFGYQQQLVPGMRPGGGPVPNFFMPMVQ
QQQQRPGGGRRAGGIQQPQQQNSMMQQQMHPRGRMFRYPQGQGRGGSGDVPSYDMGNNMP
LPIGALASNLANASPEQQRTMLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESP
EALKTKVAEAMDVLRSVAAGGAAEQLASLNLA
NT seq 1899 nt   +upstreamnt  +downstreamnt
atggctcaggttcaacttcagggtccggctgcgaatggttccaccgtggctgtcacttct
gcaccggtgaactcagggggagcagccgctgccacccagttcggcaccacgtcgctttat
gtgggagatcttgatctcaatgtgacggactcgcagcttttcgatgcgtttagccaaatg
ggtcaagtggtctctgttcgtgtctgtagggatttggccactcgcagatctcttggctat
ggatacgttaacttcaccaatccccaagatgcttcgagagcgatccaagaactgaattac
atacctctttatggtaaacctattagggttatgtactctcatcgtgatcctagtgttcgc
cgtagtggcgctgggaacatttttatcaagaatttggacgattccattgaccacaaggcg
ctgcatgataccttttcgacatttggaaacattgtgtcatgtaaggtagctgttgattcc
tctggccaatccaaaggctatgggtttgtgcaatatgccagtgaagaatctgcccagaaa
gctattgagaaactgaacggcatgttgctaaatgacaagcaagtgtatgtgggaccattc
ctgaggagacaagaaagggactcaactgcgaacaaaaccaaattcaccaatgtgtacgtg
aagaatctcggagaaaatactactgatgatgacttgaagactgcttttgtcgagtatgga
aagataacaagtgctgtggtgatgaaagatggagatgggaagtctaagggctttgggttt
gttaactttgaaaatgctgatgatgctgctaaagctgtggaggctctcaatgggcacaaa
tttgatgataaggagtggtatgttggtagagcccagaagaagtccgagagggaaacagaa
ctaagggtccgttatgaacagaatttgaaggaagctgcagacaagtttcaaagttcaaac
ttgtatgtgaagaatttagatcctagcatttcagatgagaaactgaaagagatcttttct
ccttttggtaccgttacatcttgcaaggtgatgcgggatcctaatggaacaagcaaaggc
tcgggttttgttgctttctctattcccgaagaagcaactgaggctatgtcacaactgagc
ggtaaaatgattgaaagcaaaccactctatgttgctattgcacagcggaaggaagacaga
agggtcagactacaggctcaattctcccaagtgaggccagttgcaatgccgccatctgtt
ggtccccgcatgccaatgtatcccccgggtggtcctggtattggacaacaaatgttctat
ggtcaggcccctcctaacatgattcctccccagcctgggtttgggtaccaacagcagctt
gttcctggaatgagacctggtggagggcctgtacccaattttttcatgcctatggttcag
caacagcagcagcgtcctggaggaggaagacgcgctggggggatccaacagccccagcag
caaaattccatgatgcagcaacagatgcatccaaggggtcggatgttccggtatccacaa
ggacaaggacgtggtggtagtggtgatgtgccttcatatgacatggggaacaacatgcca
ttgcctattggagctttggcttcaaatctggcgaatgctagtccagagcagcagaggacg
atgctgggtgagaatctgtacccgttggtggagcagcttgaggcagagtctgcagccaaa
gtaactgggatgcttttggagatggaccagacagaagtgctccatctgttggagtcaccg
gaagctctcaagaccaaagttgcagaggctatggatgttctaaggagtgttgctgctggt
ggtgcagcagagcagctggcttccttgaacctcgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system