KEGG   Camelina sativa (false flax): 104718157
Entry
104718157         CDS       T05044                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03020  RNA polymerase
csat03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104718157
  09124 Replication and repair
   03420 Nucleotide excision repair
    104718157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csat03021]
    104718157
   03400 DNA repair and recombination proteins [BR:csat03400]
    104718157
Enzymes [BR:csat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104718157
Transcription machinery [BR:csat03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     104718157
DNA repair and recombination proteins [BR:csat03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104718157
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 MRNIP
Other DBs
NCBI-GeneID: 104718157
NCBI-ProteinID: XP_010434140
Position
10:9525740..9532593
AA seq 1188 aa
MEYNEYEPEPQYVDDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPS
TMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKDILQKEMLPHVGVGE
HCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
RSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPSVIPTATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHHL
VAKGFIEYIDTEEEETTMISMTISDLVQARLRPDEAYTENYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRASTMGMRHGSYDKLDDDGLAPPGTRVTGEDVIIGKTTPISQDEAEGQSSRYTRRDHSI
SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL
HKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSF
ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ
NT seq 3567 nt   +upstreamnt  +downstreamnt
atggagtacaacgaatacgaacctgaacctcaatacgttgacgacgatgacgatgaggaa
attacccaggaggacgcgtgggctgttatatctgcttatttcgaagagaaaggtctcgtt
cgtcagcagctcgactcgtttgatgagtttattcagaatactatgcaagaaatcgttgac
gagtctgctgatatcgagatccgacctgaatctcagcacaatcctggccatcaatccgat
tttgcggagacaatctacaagattagctttggacagatttatctgagtaaacctatgatg
acagagtctgatggagagactgctaccctgtttcctaaggctgcgaggttgagaaacctc
acatactctgctcctttgtatgtcgatgttacaaaaagagttataaagaaagggcatgat
ggtgaggaagtcacagagacacaggattttactaaagttttcattgggaaggttcccatc
atgcttcggtctagctattgtaccttgtttcagaactcggagaaagatctgacagagctt
ggagaatgtccttatgatcagggcggatacttcattattaatggcagtgaaaaggttctg
attgcgcaggagaagatgagtacgaaccatgtttatgtgttcaaaaagagacagccaaat
aagtatgcttatgttggtgaagtccgttctatggctgagaaccagaataggcctcccagt
acaatgtttgtgcgtatgcttgctcgtgctagtgcaaaagggggttcatctggacaatat
attcgatgtactcttccatacatcagaacagaaattcctattatcatagtctttcgtgcg
ttgggatttgttgccgataaagacattttggaacacatctgctatgattttgccgacacg
cagatgatggagttactgaggccttccttggaagaagcttttgtgattcaaaatcagcag
gttgcacttgactatattgggaaacgtggtgcaactgttggtgtaaccaaggaaaaaagg
ataaagtatgctaaagatatccttcaaaaagaaatgcttcctcatgtaggagttggggaa
cattgtgagacaaagaaagcttactattttgggtatatcgtacatcggttgctgctttgt
gcacttggccgaaggccagaagatgatagagatcattatggtaacaagaggctggatctt
gctggtcctttacttggagggctctttagaatgcttttccgaaagctaacaagggatgtg
agatcttatgttcaaaagtgtgttgacaatggcaaagaagtcaatcttcaatttgccatt
aaggctaaaactattacctctggcctgaaatattctcttgctactgggaactggggccag
gcaaatgctgctggcacaagagctggagtttctcaggttcttaatcggttgacgtatgct
tcaactttgtcacatctgaggcgtctcaattctccaataggacgtgaagggaaattggca
aaaccaagacaactgcacaattcacagtggggaatgatgtgccctgctgaaacacctgaa
ggacaggcttgtggtctagtgaaaaacttggctctcatggtctacataacagttgggtca
gctgcttatcctatattggaatttttggaagaatggggtactgagaattttgaggaaata
tctccatctgttatacccacagccacaaaaatctttgtgaatggaatgtgggttggagtt
cacagagatcctgacatgttggtgaaaacgttgagacgtttgagaagaagggttgatgtc
aacactgaagttggagtagttagagatatacgtctgaaggagctccggatatacactgat
tatggccgttgtagtcgtccgttgtttattgtggataatcagaggctcttaataaagaag
agagatatctatgctctgcaacaaagggaaagtgcagaagaagatggttggcatcatctg
gttgctaagggctttatagaatacatagacacagaggaagaggagacgaccatgatttcc
atgaccatcagtgatctggttcaagctagactccgcccagacgaggcgtataccgaaaac
tacacacattgtgagattcacccatctctgatattgggtgtctgtgcttcaattatacca
tttcctgaccataatcagtcacctcgtaatacatatcaatctgccatggggaagcaagca
atgggaatttatgtcaccaactaccaatttcgcatggataccttagcctatgttctctat
taccctcaaaagcctctggttaccacaagagctatggagcatcttcactttaggcaactt
ccggcaggaattaatgctattgttgccatttcttgctattctggatataatcaagaagat
tctgtcatcatgaatcagtcttcaatagatcgtggtttcttccgatccctgttctttcgg
tcttacagagatgaggagaaaaaaatggggacgcttgtcaaagaagactttggtcgccca
gacagagcaagtacaatgggtatgcgacatggttcttatgataaactggatgatgatggt
cttgcacctcctggtactagagttacaggtgaagatgttatcattggaaaaaccactcca
atatctcaggatgaggctgaaggacaatcatcacgatacaccagacgtgatcatagtata
agcttgcgacatagtgaaactggaatggtggatcaggtgttattgactacaaatgcagat
ggtttgaggtttgtgaaagtgagggtcagatccgttcggattcctcaaattggagacaaa
tttagtagtagacacggtcagaagggaactgttggcatgacctacacgcaggaggacatg
ccttggacggttgaaggtgtcactcctgatattattgtgaatccgcatgctattccgtct
cgaatgacaattggacagctaattgagtgcatcatgggaaaagtagcagctcacatggga
aaagaaggagatgcaactccttttacagatgtcacggtggataatataagcaaagctctt
cataagtgtgggtaccaaatgcgtggatttgagagaatgtacaatggtcacacgggcaga
ccactcactgctatgatattccttggaccaacgtattaccaaaggttgaagcatatggtt
gatgacaagattcactcgcgtgggcgaggtcctgtgcaaatcttaacaagacaaccagct
gaagggcgatcccgtgatggtggtctccgttttggagagatggaacgcgattgcatgatt
gcacatggtgctgctcacttcttgaaagagaggctgtttgatcagagcgatgcgtatagg
gtacatgtgtgtgaagtctgtgggctcattgccattgcaaatctgaagaagaattcattt
gaatgcagaggctgcaagaacaaaacagatattgttcaggtttacattccatatgcatgc
aaattgctatttcaagagcttatgtctatggcaattgcaccacggatgcttactaaacac
ctcaaatcggcaaaaggcagacagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

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